Csa4G168990 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G168990
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	GTP binding protein, putative
Location	Chr4 : 8733998 .. 8734602 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGTCCGTGCGTCTTAGATTGTTCTGATGAAACATCGGTTATTCACCAAAATCTATAACATTATACATCTTTCATATGTATATCCTGTCCCCTCTTCTTTCTCACGATTTTCATTTGGAGTGACTCTTGTTGGTGTCAGTTTATTTTGTCCATCATTACTTGTTTTTTGTACCTCACTTTTGTTGCACTTTCTTCCTTCCTCTCGATGTTTGTGGGTTTATAAACCAAAAAAGAAACCTGTGTATACTTGTTTTCTAATTCATTTGTTCAGGATCTTGTAACTGAAGTTCAATGCACTCTGTACACAACTCTGTCGGAATTCGATGGTAATGTTGAAGACGAGAATGGTTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCGATGAAGGTGTCACACAAGGCAGCAGAAGCTCGTTTGAGAGTATCGAAGAAACTACTTACTCTATTCAGGGCAGGTAAGCTTGGTCAATTCATCCTTGATGATGTCCCTATCACAAAAGTTTCTTAGGAAATTTATATTCTCCGTGTTTTGTTGAAAGGACTTTGCTTTAATGGTGATTTAATTAGTAGAGCTATTAGTTTGTATTT

mRNA sequence

ATGAAATGTCCGTGCGTCTTAGATTGTTCTGATGAAACATCGGATCTTGTAACTGAAGTTCAATGCACTCTGTACACAACTCTGTCGGAATTCGATGGTAATGTTGAAGACGAGAATGGTTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCGATGAAGGTGTCACACAAGGCAGCAGAAGCTCGTTTGAGAGTATCGAAGAAACTACTTACTCTATTCAGGGCAGGTAAGCTTGGTCAATTCATCCTTGATGATGTCCCTATCACAAAAGTTTCTTAG

Coding sequence (CDS)

ATGAAATGTCCGTGCGTCTTAGATTGTTCTGATGAAACATCGGATCTTGTAACTGAAGTTCAATGCACTCTGTACACAACTCTGTCGGAATTCGATGGTAATGTTGAAGACGAGAATGGTTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCGATGAAGGTGTCACACAAGGCAGCAGAAGCTCGTTTGAGAGTATCGAAGAAACTACTTACTCTATTCAGGGCAGGTAAGCTTGGTCAATTCATCCTTGATGATGTCCCTATCACAAAAGTTTCTTAG

Protein sequence

MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS*

Homology

[Close]

BLAST of Csa4G168990 vs. Swiss-Prot
Match: SIN2_ARATH (Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-25
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           D+++EVQ +LY TLSEFDG+ EDEN LE LIE QFE LQKA+K+ HKA+EARL VSKK L
Sbjct: 295 DMISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFL 354

Query: 75  TLFRAGKLGQFILDDVPITK 95
           TLFR G+LG FILDDVP T+
Sbjct: 355 TLFRTGRLGPFILDDVPETE 374

[Close]

BLAST of Csa4G168990 vs. Swiss-Prot
Match: DGP2_ARATH (DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana GN=DGP2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-12
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 10  SDETSD-LVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAE-ARL 69
           +D T D +V +V+  LY T+S FDGN+EDE  + +LIE QF AL+  ++V  +A+E A L
Sbjct: 285 TDHTQDFIVYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEASEFADL 344

Query: 70  RVSKKLLTLFRAGKLGQFILDDV 91
           RV+ K+L L+R G+LG + L+ V
Sbjct: 345 RVASKILNLYRTGRLGHYTLEHV 367

[Close]

BLAST of Csa4G168990 vs. TrEMBL
Match: A0A0A0KZR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G168990 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH 60
          MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH
Sbjct: 1  MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH 60

Query: 61 KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS 97
          KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS
Sbjct: 61 KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS 96

[Close]

BLAST of Csa4G168990 vs. TrEMBL
Match: F6HKV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08770 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-25
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQC L+ TLSEF+GN+E+EN LESLIE QFE LQKAMK+ HKA+EAR  VSKKLL
Sbjct: 293 DLVTEVQCALHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLL 352

Query: 75  TLFRAGKLGQFILDDVP 92
           TLFR GKLG FILDDVP
Sbjct: 353 TLFRTGKLGPFILDDVP 369

[Close]

BLAST of Csa4G168990 vs. TrEMBL
Match: B9H9S8_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0006s04750g PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-25
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           +LVTEVQC +Y TL+EF+GNVEDEN LE+LIE QFE LQKA+K+ HKA+EARL VSKK L
Sbjct: 294 NLVTEVQCAMYKTLAEFNGNVEDENDLENLIEQQFEVLQKALKIPHKASEARLMVSKKFL 353

Query: 75  TLFRAGKLGQFILDDVPIT 94
           TLFR GKLG FILDDVP T
Sbjct: 354 TLFRTGKLGCFILDDVPET 372

[Close]

BLAST of Csa4G168990 vs. TrEMBL
Match: B9T5C1_RICCO (GTP binding protein, putative OS=Ricinus communis GN=RCOM_0770010 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           D+VTEVQC+LY TL+EF+GNVEDEN LE+LIE QF  LQKA+K+ HKA+EARL VSKK L
Sbjct: 294 DMVTEVQCSLYKTLAEFNGNVEDENDLENLIEQQFAVLQKALKIPHKASEARLMVSKKFL 353

Query: 75  TLFRAGKLGQFILDDVPIT 94
           TLFR GKLG FILD+VP T
Sbjct: 354 TLFRTGKLGHFILDNVPET 372

[Close]

BLAST of Csa4G168990 vs. TrEMBL
Match: M5VVZ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007169mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-24
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQC LY+TLSEF+GN+EDE+ LE LIE QFEALQKA+K+ +K  EARL VSKK L
Sbjct: 297 DLVTEVQCALYSTLSEFNGNMEDESDLEVLIEQQFEALQKALKIPNKGCEARLMVSKKFL 356

Query: 75  TLFRAGKLGQFILDDVP 92
           TLFR GKLG FILDDVP
Sbjct: 357 TLFRTGKLGPFILDDVP 373

[Close]

BLAST of Csa4G168990 vs. TAIR10
Match: AT2G41670.1 (AT2G41670.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           D+++EVQ +LY TLSEFDG+ EDEN LE LIE QFE LQKA+K+ HKA+EARL VSKK L
Sbjct: 295 DMISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFL 354

Query: 75  TLFRAGKLGQFILDDVPITK 95
           TLFR G+LG FILDDVP T+
Sbjct: 355 TLFRTGRLGPFILDDVPETE 374

[Close]

BLAST of Csa4G168990 vs. TAIR10
Match: AT4G10650.1 (AT4G10650.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.7e-14
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 10  SDETSD-LVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAE-ARL 69
           +D T D +V +V+  LY T+S FDGN+EDE  + +LIE QF AL+  ++V  +A+E A L
Sbjct: 285 TDHTQDFIVYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEASEFADL 344

Query: 70  RVSKKLLTLFRAGKLGQFILDDV 91
           RV+ K+L L+R G+LG + L+ V
Sbjct: 345 RVASKILNLYRTGRLGHYTLEHV 367

[Close]

BLAST of Csa4G168990 vs. NCBI nr
Match: gi|700198699|gb|KGN53857.1| (hypothetical protein Csa_4G168990 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH 60
          MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH
Sbjct: 1  MKCPCVLDCSDETSDLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH 60

Query: 61 KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS 97
          KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS
Sbjct: 61 KAAEARLRVSKKLLTLFRAGKLGQFILDDVPITKVS 96

[Close]

BLAST of Csa4G168990 vs. NCBI nr
Match: gi|778692270|ref|XP_011653431.1| (PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL
Sbjct: 260 DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 319

Query: 75  TLFRAGKLGQFILDDVPITKVS 97
           TLFRAGKLGQFILDDVPITKVS
Sbjct: 320 TLFRAGKLGQFILDDVPITKVS 341

[Close]

BLAST of Csa4G168990 vs. NCBI nr
Match: gi|778692268|ref|XP_004149387.2| (PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL
Sbjct: 309 DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 368

Query: 75  TLFRAGKLGQFILDDVPITKVS 97
           TLFRAGKLGQFILDDVPITKVS
Sbjct: 369 TLFRAGKLGQFILDDVPITKVS 390

[Close]

BLAST of Csa4G168990 vs. NCBI nr
Match: gi|659121629|ref|XP_008460756.1| (PREDICTED: mitochondrial GTPase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQC LYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH AAEARLRVSKKLL
Sbjct: 294 DLVTEVQCALYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHMAAEARLRVSKKLL 353

Query: 75  TLFRAGKLGQFILDDVPITKVS 97
           TLFRAGKLGQFILDDVPITK+S
Sbjct: 354 TLFRAGKLGQFILDDVPITKIS 375

[Close]

BLAST of Csa4G168990 vs. NCBI nr
Match: gi|659121631|ref|XP_008460757.1| (PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 15  DLVTEVQCTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLL 74
           DLVTEVQC LYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSH AAEARLRVSKKLL
Sbjct: 245 DLVTEVQCALYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHMAAEARLRVSKKLL 304

Query: 75  TLFRAGKLGQFILDDVPITKVS 97
           TLFRAGKLGQFILDDVPITK+S
Sbjct: 305 TLFRAGKLGQFILDDVPITKIS 326

The following BLAST results are available for this feature:

BLAST of Csa4G168990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIN2_ARATH	3.2e-25	71.25	Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1	[more]
DGP2_ARATH	1.4e-12	46.99	DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana GN=DGP2 PE=3 SV=1	[more]

BLAST of Csa4G168990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZR0_CUCSA	6.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G168990 PE=4 SV=1	[more]
F6HKV4_VITVI	3.8e-25	79.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08770 PE=4 SV=...	[more]
B9H9S8_POPTR	8.4e-25	75.95	GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0006s04750g PE=4 SV=1	[more]
B9T5C1_RICCO	1.4e-24	74.68	GTP binding protein, putative OS=Ricinus communis GN=RCOM_0770010 PE=4 SV=1	[more]
M5VVZ7_PRUPE	5.4e-24	76.62	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007169mg PE=4 SV=1	[more]

BLAST of Csa4G168990 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41670.1	1.8e-26	71.25	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT4G10650.1	7.7e-14	46.99	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of Csa4G168990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198699\|gb\|KGN53857.1\|	9.4e-46	100.00	hypothetical protein Csa_4G168990 [Cucumis sativus]	[more]
gi\|778692270\|ref\|XP_011653431.1\|	3.0e-36	100.00	PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis sativus]	[more]
gi\|778692268\|ref\|XP_004149387.2\|	3.0e-36	100.00	PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X1 [Cucumis sativu...	[more]
gi\|659121629\|ref\|XP_008460756.1\|	7.5e-35	96.34	PREDICTED: mitochondrial GTPase 1 isoform X1 [Cucumis melo]	[more]
gi\|659121631\|ref\|XP_008460757.1\|	7.5e-35	96.34	PREDICTED: mitochondrial GTPase 1 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005525	GTP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU133143	cucumber EST collection version 3.0	transcribed_cluster
CU162593	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G168990.1	Csa4G168990.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162593	CU162593	transcribed_cluster
CU133143	CU133143	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G168990	Melon (DHL92) v3.6.1	cumedB313
Csa4G168990	Silver-seed gourd	carcuB0213
Csa4G168990	Silver-seed gourd	carcuB0313
Csa4G168990	Watermelon (97103) v2	cuwmbB296
Csa4G168990	Wax gourd	cuwgoB392
Csa4G168990	Wax gourd	cuwgoB411
Csa4G168990	Cucumber (Gy14) v1	cgycuB246
Csa4G168990	Cucurbita maxima (Rimu)	cmacuB666
Csa4G168990	Cucurbita maxima (Rimu)	cmacuB673
Csa4G168990	Cucurbita maxima (Rimu)	cmacuB868
Csa4G168990	Cucurbita moschata (Rifu)	cmocuB654
Csa4G168990	Cucurbita moschata (Rifu)	cmocuB662
Csa4G168990	Cucurbita moschata (Rifu)	cmocuB857
Csa4G168990	Melon (DHL92) v3.5.1	cumeB331
Csa4G168990	Watermelon (Charleston Gray)	cuwcgB299
Csa4G168990	Watermelon (Charleston Gray)	cuwcgB308
Csa4G168990	Watermelon (97103) v1	cuwmB344
Csa4G168990	Cucurbita pepo (Zucchini)	cpecuB074
Csa4G168990	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G168990	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G168990	Cucumber (Gy14) v2	cgybcuB165