Csa4G154310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G154310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description30S ribosomal protein S3, chloroplastic; contains IPR005704 (Ribosomal protein S3, bacterial)
LocationChr4 : 8321539 .. 8321763 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAGCTATTGCATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

mRNA sequence

ATGAAAAAAGCTATTGCATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

Coding sequence (CDS)

ATGAAAAAAGCTATTGCATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGATATTAGGCATAAAAATTTGGATATTTGTAGACGAGCAATAA

Protein sequence

MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ*
Homology
[Close]
BLAST of Csa4G154310 vs. Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.8e-36
Identity = 73/74 (98.65%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           GILGIKIWIFVDEQ
Sbjct: 205 GILGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. Swiss-Prot
Match: RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa GN=rps3 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.2e-33
Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCY VRTIY
Sbjct: 145 MKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIY 204

Query: 61  GILGIKIWIFVD 73
           G+LGIKIWIF+D
Sbjct: 205 GVLGIKIWIFID 216

[Close]
BLAST of Csa4G154310 vs. Swiss-Prot
Match: RR3_DRIGR (30S ribosomal protein S3, chloroplastic OS=Drimys granadensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-32
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKID+C Y VRTIY
Sbjct: 143 MKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIY 202

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 203 GVLGIKIWIFVDEQ 216

[Close]
BLAST of Csa4G154310 vs. Swiss-Prot
Match: RR3_SOYBN (30S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-32
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKG+QVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCY VRTIY
Sbjct: 145 MKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIY 204

Query: 61  GILGIKIWIF 71
           G+LGIK+WIF
Sbjct: 205 GVLGIKVWIF 214

[Close]
BLAST of Csa4G154310 vs. Swiss-Prot
Match: RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-32
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKID+C Y VRTIY
Sbjct: 146 MKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIY 205

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 206 GVLGIKIWIFVDEQ 219

[Close]
BLAST of Csa4G154310 vs. TrEMBL
Match: A0A0A0L114_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=Csa_4G154310 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
          MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 1  MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60

Query: 61 GILGIKIWIFVDEQ 75
          GILGIKIWIFVDEQ
Sbjct: 61 GILGIKIWIFVDEQ 74

[Close]
BLAST of Csa4G154310 vs. TrEMBL
Match: W8E3G6_9ROSI (Ribosomal protein S3 OS=Cucumis hystrix GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.6e-34
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           GILGIKIWIFVDEQ
Sbjct: 205 GILGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. TrEMBL
Match: X2EYI2_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.9e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. TrEMBL
Match: X2F0P5_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.9e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. TrEMBL
Match: X2EZ87_LAGSI (30S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.9e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. TAIR10
Match: ATCG00800.1 (ATCG00800.1 structural constituent of ribosome)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-33
Identity = 67/74 (90.54%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQA TKGIQVQIAGRIDGKEIARVEWIREGRVPLQTI AKIDYC Y VRTIY
Sbjct: 145 MKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDE+
Sbjct: 205 GVLGIKIWIFVDEE 218

[Close]
BLAST of Csa4G154310 vs. NCBI nr
Match: gi|700198673|gb|KGN53831.1| (30S ribosomal protein S3, chloroplastic [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
          MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 1  MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60

Query: 61 GILGIKIWIFVDEQ 75
          GILGIKIWIFVDEQ
Sbjct: 61 GILGIKIWIFVDEQ 74

[Close]
BLAST of Csa4G154310 vs. NCBI nr
Match: gi|68164842|ref|YP_247638.1| (ribosomal protein S3 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           GILGIKIWIFVDEQ
Sbjct: 205 GILGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. NCBI nr
Match: gi|952954725|gb|ALO22084.1| (ribosomal protein S3 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. NCBI nr
Match: gi|595645361|gb|AHM88822.1| (ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

[Close]
BLAST of Csa4G154310 vs. NCBI nr
Match: gi|346578230|ref|YP_004841822.1| (ribosomal protein S3 [Cucumis melo subsp. melo])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 1   MKKAIALTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 60
           MKKAI LTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY
Sbjct: 145 MKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIY 204

Query: 61  GILGIKIWIFVDEQ 75
           G+LGIKIWIFVDEQ
Sbjct: 205 GVLGIKIWIFVDEQ 218

The following BLAST results are available for this feature:
BLAST of Csa4G154310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR3_CUCSA6.8e-3698.6530S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1[more]
RR3_LACSA9.2e-3393.0630S ribosomal protein S3, chloroplastic OS=Lactuca sativa GN=rps3 PE=3 SV=1[more]
RR3_DRIGR2.7e-3291.8930S ribosomal protein S3, chloroplastic OS=Drimys granadensis GN=rps3 PE=3 SV=1[more]
RR3_SOYBN2.7e-3292.8630S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1[more]
RR3_LIRTU2.7e-3291.8930S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 ... [more]
BLAST of Csa4G154310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L114_CUCSA2.0e-34100.0030S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=Csa_4G154310 PE=3 ... [more]
W8E3G6_9ROSI7.6e-3498.65Ribosomal protein S3 OS=Cucumis hystrix GN=rps3 PE=3 SV=1[more]
X2EYI2_LAGSI9.9e-3497.3030S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1[more]
X2F0P5_LAGSI9.9e-3497.3030S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1[more]
X2EZ87_LAGSI9.9e-3497.3030S ribosomal protein S3, chloroplastic OS=Lagenaria siceraria GN=rps3 PE=3 SV=1[more]
BLAST of Csa4G154310 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00800.12.6e-3390.54ATCG00800.1 structural constituent of ribosome[more]
BLAST of Csa4G154310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198673|gb|KGN53831.1|2.9e-34100.0030S ribosomal protein S3, chloroplastic [Cucumis sativus][more]
gi|68164842|ref|YP_247638.1|1.1e-3398.65ribosomal protein S3 [Cucumis sativus][more]
gi|952954725|gb|ALO22084.1|1.4e-3397.30ribosomal protein S3 (plastid) [Cucurbita ecuadorensis][more]
gi|595645361|gb|AHM88822.1|1.4e-3397.30ribosomal protein S3, partial (chloroplast) [Lagenaria siceraria][more]
gi|346578230|ref|YP_004841822.1|1.4e-3397.30ribosomal protein S3 [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001351Ribosomal_S3_C
IPR005704Ribosomal_S3_bac
IPR018280Ribosomal_S3_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127751cucumber EST collection version 3.0transcribed_cluster
CU177019cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G154310.1Csa4G154310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127751CU127751transcribed_cluster
CU177019CU177019transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001351Ribosomal protein S3, C-terminalGENE3DG3DSA:3.30.1140.32coord: 1..73
score: 8.1
IPR001351Ribosomal protein S3, C-terminalunknownSSF54821Ribosomal protein S3 C-terminal domaincoord: 1..73
score: 5.89
IPR005704Ribosomal protein S3, bacterialTIGRFAMsTIGR01009TIGR01009coord: 1..73
score: 6.9
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 30..64
scor
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 1..73
score: 2.5
NoneNo IPR availablePANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3, CHLOROPLASTICcoord: 1..73
score: 2.5
NoneNo IPR availablePFAMPF00189Ribosomal_S3_Ccoord: 1..69
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G154310Silver-seed gourdcarcuB0214
Csa4G154310Watermelon (97103) v2cuwmbB302
Csa4G154310Wax gourdcuwgoB392
Csa4G154310Cucumber (Gy14) v1cgycuB011
Csa4G154310Cucurbita maxima (Rimu)cmacuB673
Csa4G154310Cucurbita moschata (Rifu)cmocuB662
Csa4G154310Melon (DHL92) v3.5.1cumeB331
Csa4G154310Watermelon (Charleston Gray)cuwcgB305
Csa4G154310Cucurbita pepo (Zucchini)cpecuB074
Csa4G154310Bottle gourd (USVL1VR-Ls)culsiB260
Csa4G154310Cucumber (Gy14) v2cgybcuB165
Csa4G154310Melon (DHL92) v3.6.1cumedB313