Csa4G131180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G131180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 7943037 .. 7943367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGCGACGGTAAATCAGTTATCCTCTACGGTATCCACCATGAATCGCTTACTGGTAGCACATTCTAACTAGTCCCGCTAAATCGCAGAGCGACACGATAGACAATTCACCACATAGATGGAATATATCTACGCAGCATATGTGCAATGCATCCCACAGCCGATCATTGTACCAGATTTAGTGACACCCATTTCTCCTCTCGATGTTCCAAACTCGCCTCTTGGCAACTTAGCAACATGCCCCCTTGCTTCGAAAATGCAACACTAGGGATGTACTATTACCATGAAATTGTCGCCTACTTAATCTTTTTATTTGTAATTACTTTCAT

mRNA sequence

ATGGTCGCGACGGTAAATCAGTTATCCTCTACGGTATCCACCATGAATCGCTTACTGCCGATCATTGTACCAGATTTAGTGACACCCATTTCTCCTCTCGATGTTCCAAACTCGCCTCTTGGCAACTTAGCAACATGCCCCCTTGCTTCGAAAATGCAACACTAG

Coding sequence (CDS)

ATGGTCGCGACGGTAAATCAGTTATCCTCTACGGTATCCACCATGAATCGCTTACTGCCGATCATTGTACCAGATTTAGTGACACCCATTTCTCCTCTCGATGTTCCAAACTCGCCTCTTGGCAACTTAGCAACATGCCCCCTTGCTTCGAAAATGCAACACTAG

Protein sequence

MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH*
Homology
[Close]
BLAST of Csa4G131180 vs. TrEMBL
Match: A0A0A0KY76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131180 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH 55
          MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH
Sbjct: 1  MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH 54

[Close]
BLAST of Csa4G131180 vs. TrEMBL
Match: A0A0A0K820_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306900 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-06
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 1   MVATVNQLSSTVSTMNRLLP----IIVPDLVTPISPLDVPNSPLGNLATCP 48
           MVAT+NQL ST+S  + LL     II P+LVT I PL+VPNSPLG+  TCP
Sbjct: 122 MVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCP 172

[Close]
BLAST of Csa4G131180 vs. NCBI nr
Match: gi|700198646|gb|KGN53804.1| (hypothetical protein Csa_4G131180 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH 55
          MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH
Sbjct: 1  MVATVNQLSSTVSTMNRLLPIIVPDLVTPISPLDVPNSPLGNLATCPLASKMQH 54

[Close]
BLAST of Csa4G131180 vs. NCBI nr
Match: gi|700189249|gb|KGN44482.1| (hypothetical protein Csa_7G306900 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 1   MVATVNQLSSTVSTMNRLLP----IIVPDLVTPISPLDVPNSPLGNLATCP 48
           MVAT+NQL ST+S  + LL     II P+LVT I PL+VPNSPLG+  TCP
Sbjct: 122 MVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCP 172

The following BLAST results are available for this feature:
BLAST of Csa4G131180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY76_CUCSA1.4e-21100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131180 PE=4 SV=1[more]
A0A0A0K820_CUCSA3.8e-0660.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306900 PE=4 SV=1[more]
BLAST of Csa4G131180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198646|gb|KGN53804.1|2.0e-21100.00hypothetical protein Csa_4G131180 [Cucumis sativus][more]
gi|700189249|gb|KGN44482.1|5.4e-0660.78hypothetical protein Csa_7G306900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU160073cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G131180.1Csa4G131180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160073CU160073transcribed_cluster