Csa4G131170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G131170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 7942344 .. 7942902 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTTGCCCTATGCTACTGTATTTCTACAGCCCTCCTCTGTTATGGGATTTGTGCTTCTATTGTCATCTGCCACTATGCTTTAAGGCGTTGGTGCTATGATGGGAAGAAGGAAGGTCGAATTCAATTACTGGGACATCTTCGCATGCTTGCTCAACTGAATTGTCTTGGGTACTTTCACGCGTCTGCGGGTCTGTAACTTATTGAGGTCAGGCGCTAAATTGCTGCTAGTTGGTTGGTTATTCAATTGATTAGGCGACACTGAAGTTTGTCACGAAAAATGTGTTCAGGAGAAGAGGATGTTGTGCGATTAAAGGTTGGTGAAGGGTGGGGGAATTGGATCTGGGCGCTAATGGTCAAGAGAGGGCTCCACTGGCTATGAGATACAAGATTGGGTAACGTAAAATGATCAATGGTCGCATCAAGGGTGGATTGTTTTTGTGGGCTCGGTTGTGGTGAAGGTGAATTCGTCTCGTGGGGAAGCATGGGCTTGCATTCTGCATCATCCCCATGGCCCGCCAAAGTGGATTCTCATGAGCTGTCTCAATCGATGA

mRNA sequence

ATGGCTTCCTTTGCCCTATGCTACTGTATTTCTACAGCCCTCCTCTGTTATGGGATTTGTGCTTCTATTGTCATCTGCCACTATGCTTTAAGGCGTTGGTGCTATGATGGGAAGAAGGAAGGTCGAATTCAATTACTGGGACATCTTCGCATGCTTGCTCAACTGAATTGTCTTGGGTACTTTCACGCGTCTGCGGGAGAAGAGGATGTTGTGCGATTAAAGGTTGGTGAAGGGTGGGGGAATTGGATCTGGGCGCTAATGGTGAATTCGTCTCGTGGGGAAGCATGGGCTTGCATTCTGCATCATCCCCATGGCCCGCCAAAGTGGATTCTCATGAGCTGTCTCAATCGATGA

Coding sequence (CDS)

ATGGCTTCCTTTGCCCTATGCTACTGTATTTCTACAGCCCTCCTCTGTTATGGGATTTGTGCTTCTATTGTCATCTGCCACTATGCTTTAAGGCGTTGGTGCTATGATGGGAAGAAGGAAGGTCGAATTCAATTACTGGGACATCTTCGCATGCTTGCTCAACTGAATTGTCTTGGGTACTTTCACGCGTCTGCGGGAGAAGAGGATGTTGTGCGATTAAAGGTTGGTGAAGGGTGGGGGAATTGGATCTGGGCGCTAATGGTGAATTCGTCTCGTGGGGAAGCATGGGCTTGCATTCTGCATCATCCCCATGGCCCGCCAAAGTGGATTCTCATGAGCTGTCTCAATCGATGA

Protein sequence

MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGYFHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR*

Homology

[Close]

BLAST of Csa4G131170 vs. TrEMBL
Match: A0A0A0KW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131170 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-66
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY 60
           MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY
Sbjct: 1   MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY 60

Query: 61  FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR 118
           FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR
Sbjct: 61  FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR 117

[Close]

BLAST of Csa4G131170 vs. NCBI nr
Match: gi|700198645|gb|KGN53803.1| (hypothetical protein Csa_4G131170 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-66
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY 60
           MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY
Sbjct: 1   MASFALCYCISTALLCYGICASIVICHYALRRWCYDGKKEGRIQLLGHLRMLAQLNCLGY 60

Query: 61  FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR 118
           FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR
Sbjct: 61  FHASAGEEDVVRLKVGEGWGNWIWALMVNSSRGEAWACILHHPHGPPKWILMSCLNR 117

The following BLAST results are available for this feature:

BLAST of Csa4G131170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW69_CUCSA	1.1e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131170 PE=4 SV=1	[more]

BLAST of Csa4G131170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198645\|gb\|KGN53803.1\|	1.5e-66	100.00	hypothetical protein Csa_4G131170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G131170.1	Csa4G131170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G131170	Cucurbita moschata (Rifu)	cmocuB247
Csa4G131170	Cucurbita moschata (Rifu)	cmocuB465
Csa4G131170	Melon (DHL92) v3.5.1	cumeB279
Csa4G131170	Melon (DHL92) v3.5.1	cumeB288
Csa4G131170	Melon (DHL92) v3.5.1	cumeB316
Csa4G131170	Melon (DHL92) v3.5.1	cumeB331
Csa4G131170	Watermelon (Charleston Gray)	cuwcgB298
Csa4G131170	Watermelon (Charleston Gray)	cuwcgB330
Csa4G131170	Watermelon (97103) v1	cuwmB309
Csa4G131170	Watermelon (97103) v1	cuwmB337
Csa4G131170	Watermelon (97103) v1	cuwmB357
Csa4G131170	Cucurbita pepo (Zucchini)	cpecuB567
Csa4G131170	Cucurbita pepo (Zucchini)	cpecuB617
Csa4G131170	Bottle gourd (USVL1VR-Ls)	culsiB302
Csa4G131170	Bottle gourd (USVL1VR-Ls)	culsiB313
Csa4G131170	Cucumber (Gy14) v2	cgybcuB029
Csa4G131170	Cucumber (Gy14) v2	cgybcuB165
Csa4G131170	Melon (DHL92) v3.6.1	cumedB264
Csa4G131170	Melon (DHL92) v3.6.1	cumedB273
Csa4G131170	Melon (DHL92) v3.6.1	cumedB300
Csa4G131170	Watermelon (97103) v2	cuwmbB295
Csa4G131170	Watermelon (97103) v2	cuwmbB314
Csa4G131170	Wax gourd	cuwgoB369
Csa4G131170	Wax gourd	cuwgoB373
Csa4G131170	Wax gourd	cuwgoB413
Csa4G131170	Wax gourd	cuwgoB427
Csa4G131170	Cucumber (Chinese Long) v2	cucuB027
Csa4G131170	Cucumber (Gy14) v1	cgycuB141
Csa4G131170	Cucurbita maxima (Rimu)	cmacuB262
Csa4G131170	Cucurbita maxima (Rimu)	cmacuB476