Csa4G131150 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G131150
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 7940255 .. 7940650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

mRNA sequence

ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

Coding sequence (CDS)

ATGATGAAAGGGTGTCTTCATCACAACATTCTAGGATGCGTTATAATCGAACAATTCTATTTTGGATTGAGTAGAGATACACAACAATTTGTAGACGCAGTATTTATAGGTGGGATGCTTCGATTATCCTGCAACCATATTAAGACAACGCTAGACGCTATGGTCAGTAACAGTCAAGAATGGAGAGATAACGAATTTGGCTCACATAATGAAAGCAAAGGAAACAGAAGAGAAAAAGGAAGGACAAACAAAGGATCAAATGGGAATGCAATGATAACATTGCAGAGTCAGGTTACTGAAATGAATAAGCTCTTGCAGTCCATGGCTTTGTCACAACTCAATGCCATTGGAAGTTCAATTAAAGTAGTACACCAAGTGTTGAATTTGGTTGTGTAG

Protein sequence

MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSIKVVHQVLNLVV*

Homology

[Close]

BLAST of Csa4G131150 vs. TrEMBL
Match: A0A0A0L0Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.3e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 121 KVVHQVLNLVV 132
           KVVHQVLNLVV
Sbjct: 121 KVVHQVLNLVV 131

[Close]

BLAST of Csa4G131150 vs. TrEMBL
Match: A0A0A0K6F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-25
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140

Query: 121 KVVHQVLNLVV 132
             V QV   +V
Sbjct: 141 HAVKQVNKFIV 143

[Close]

BLAST of Csa4G131150 vs. TrEMBL
Match: A0A0A0LAQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282990 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 34 VFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGN 90
          VF GGML  S NHIKTTL+AM SNSQEWRD+EFGS NES G+RR +GR ++GS GN
Sbjct: 2  VFTGGMLWSSYNHIKTTLEAMTSNSQEWRDDEFGSRNESIGSRRGRGRIDEGSEGN 57

[Close]

BLAST of Csa4G131150 vs. NCBI nr
Match: gi|700198643|gb|KGN53801.1| (hypothetical protein Csa_4G131150 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 121 KVVHQVLNLVV 132
           KVVHQVLNLVV
Sbjct: 121 KVVHQVLNLVV 131

[Close]

BLAST of Csa4G131150 vs. NCBI nr
Match: gi|700189251|gb|KGN44484.1| (hypothetical protein Csa_7G307410 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 5.6e-25
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140

Query: 121 KVVHQVLNLVV 132
             V QV   +V
Sbjct: 141 HAVKQVNKFIV 143

[Close]

BLAST of Csa4G131150 vs. NCBI nr
Match: gi|700202629|gb|KGN57762.1| (hypothetical protein Csa_3G282990 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 34 VFIGGMLRLSCNHIKTTLDAMVSNSQEWRDNEFGSHNESKGNRREKGRTNKGSNGN 90
          VF GGML  S NHIKTTL+AM SNSQEWRD+EFGS NES G+RR +GR ++GS GN
Sbjct: 2  VFTGGMLWSSYNHIKTTLEAMTSNSQEWRDDEFGSRNESIGSRRGRGRIDEGSEGN 57

The following BLAST results are available for this feature:

BLAST of Csa4G131150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y4_CUCSA	8.3e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1	[more]
A0A0A0K6F9_CUCSA	3.9e-25	49.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1	[more]
A0A0A0LAQ9_CUCSA	1.5e-13	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282990 PE=4 SV=1	[more]

BLAST of Csa4G131150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198643\|gb\|KGN53801.1\|	1.2e-67	100.00	hypothetical protein Csa_4G131150 [Cucumis sativus]	[more]
gi\|700189251\|gb\|KGN44484.1\|	5.6e-25	49.62	hypothetical protein Csa_7G307410 [Cucumis sativus]	[more]
gi\|700202629\|gb\|KGN57762.1\|	2.2e-13	71.43	hypothetical protein Csa_3G282990 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G131150.1	Csa4G131150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G131150	MELO3C009066	Melon (DHL92) v3.5.1	cumeB331
Csa4G131150	CSPI04G10170	Wild cucumber (PI 183967)	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G131150	Watermelon (97103) v2	cuwmbB295
Csa4G131150	Watermelon (97103) v2	cuwmbB314
Csa4G131150	Wax gourd	cuwgoB369
Csa4G131150	Wax gourd	cuwgoB373
Csa4G131150	Wax gourd	cuwgoB413
Csa4G131150	Wax gourd	cuwgoB427
Csa4G131150	Cucumber (Chinese Long) v2	cucuB027
Csa4G131150	Cucumber (Gy14) v1	cgycuB141
Csa4G131150	Cucurbita maxima (Rimu)	cmacuB262
Csa4G131150	Cucurbita maxima (Rimu)	cmacuB476
Csa4G131150	Cucurbita moschata (Rifu)	cmocuB247
Csa4G131150	Cucurbita moschata (Rifu)	cmocuB465
Csa4G131150	Melon (DHL92) v3.5.1	cumeB279
Csa4G131150	Melon (DHL92) v3.5.1	cumeB288
Csa4G131150	Melon (DHL92) v3.5.1	cumeB316
Csa4G131150	Watermelon (Charleston Gray)	cuwcgB298
Csa4G131150	Watermelon (Charleston Gray)	cuwcgB330
Csa4G131150	Watermelon (97103) v1	cuwmB309
Csa4G131150	Watermelon (97103) v1	cuwmB337
Csa4G131150	Watermelon (97103) v1	cuwmB357
Csa4G131150	Cucurbita pepo (Zucchini)	cpecuB567
Csa4G131150	Cucurbita pepo (Zucchini)	cpecuB617
Csa4G131150	Bottle gourd (USVL1VR-Ls)	culsiB302
Csa4G131150	Bottle gourd (USVL1VR-Ls)	culsiB313
Csa4G131150	Cucumber (Gy14) v2	cgybcuB029
Csa4G131150	Cucumber (Gy14) v2	cgybcuB165
Csa4G131150	Melon (DHL92) v3.6.1	cumedB264
Csa4G131150	Melon (DHL92) v3.6.1	cumedB273
Csa4G131150	Melon (DHL92) v3.6.1	cumedB300