Csa4G130620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G130620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTMV resistance protein N; contains IPR001611 (Leucine-rich repeat)
LocationChr4 : 7908912 .. 7909184 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGACATTGGAGGAACATTCATAGATCAAGCACCAAATGCTATGGTTTGTTTAAGGAGTCTTGAAACTTTGAATTGTGAAAGGCTTTCAAGAAATATTTGGTGGTAATTGAAGGATTTGGTTGGGAGCAATGGTGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATCTTGTGGACGAAGACATTCCTGATGATATCAAATGTTTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTGTTTTGTAAGGCTAAAAAATTGA

mRNA sequence

ATGCTTGACATTGGAGGAACATTCATAGATCAAGCACCAAATGCTATGGATTTGGTTGGGAGCAATGGTGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATCTTGTGGACGAAGACATTCCTGATGATATCAAATGTTTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTGTTTTGTAAGGCTAAAAAATTGA

Coding sequence (CDS)

ATGCTTGACATTGGAGGAACATTCATAGATCAAGCACCAAATGCTATGGATTTGGTTGGGAGCAATGGTGTTTTGCCTATTAGAGATTTGAATCTAAGTGATTGCAATCTTGTGGACGAAGACATTCCTGATGATATCAAATGTTTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTGTTTTGTAAGGCTAAAAAATTGA

Protein sequence

MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKNCFVRLKN*
Homology
[Close]
BLAST of Csa4G130620 vs. TrEMBL
Match: A0A0A0KZJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130620 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN 60
          MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN
Sbjct: 1  MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN 60

Query: 61 CFVRLKN 68
          CFVRLKN
Sbjct: 61 CFVRLKN 67

[Close]
BLAST of Csa4G130620 vs. TrEMBL
Match: A0A0A0L9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695840 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-21
Identity = 60/89 (67.42%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1   MLDIGGTFIDQAPNA-----------------------MDLVGSNGVLPIRDLNLSDCNL 60
           MLDI GTFI QAPNA                       MDLVGSNGVLPI DLN SDCNL
Sbjct: 21  MLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSNGVLPITDLNQSDCNL 80

Query: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 67
           VDEDIPDDIKC SLLEILDLSKN FVRLK
Sbjct: 81  VDEDIPDDIKCLSLLEILDLSKNSFVRLK 109

[Close]
BLAST of Csa4G130620 vs. TrEMBL
Match: A0A0A0KU16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G495930 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-20
Identity = 58/89 (65.17%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1   MLDIGGTFIDQAPNAM-----------------------DLVGSNGVLPIRDLNLSDCNL 60
           MLD GGTFIDQAPNA+                       DLVGSN VLPIRDLNLSDCN+
Sbjct: 21  MLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNI 80

Query: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 67
           VDEDI DDIKC  LLEILDLSKN FVRLK
Sbjct: 81  VDEDIRDDIKCLFLLEILDLSKNSFVRLK 109

[Close]
BLAST of Csa4G130620 vs. TrEMBL
Match: A0A0A0KST1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647550 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 2   LDIGGTFIDQAPNAMDL------------------VGSNGVLPIRDLNLSDCNLVDEDIP 61
           LDIGGT I   P   +L                  + +  +  + DLNLSDCNLVDEDIP
Sbjct: 603 LDIGGTSISTIPFLENLRILNCERLKSNIWHSLAGLAAQYLRSLNDLNLSDCNLVDEDIP 662

Query: 62  DDIKCFSLLEILDLSKNCFVRL 66
           +D++ FS LEILDLS N F RL
Sbjct: 663 NDLELFSSLEILDLSSNHFERL 684

[Close]
BLAST of Csa4G130620 vs. TrEMBL
Match: M4QW81_CUCME (Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-07
Identity = 40/82 (48.78%), Postives = 45/82 (54.88%), Query Frame = 1 

Query: 2   LDIGGTFIDQAPNAMDLVGSN------------GVLP------IRDLNLSDCNLVDEDIP 61
           LDIGGT I   P   +L   N              LP      ++DLNLSDCNLVDEDIP
Sbjct: 779 LDIGGTSISTIPFVENLRILNCERLKSIIWHSLASLPTEYFSSLKDLNLSDCNLVDEDIP 838

Query: 62  DDIKCFSLLEILDLSKNCFVRL 66
            D++ FS LEILDL  N F RL
Sbjct: 839 SDLELFSSLEILDLGSNHFERL 860

[Close]
BLAST of Csa4G130620 vs. NCBI nr
Match: gi|700198639|gb|KGN53797.1| (hypothetical protein Csa_4G130620 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN 60
          MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN
Sbjct: 1  MLDIGGTFIDQAPNAMDLVGSNGVLPIRDLNLSDCNLVDEDIPDDIKCFSLLEILDLSKN 60

Query: 61 CFVRLKN 68
          CFVRLKN
Sbjct: 61 CFVRLKN 67

[Close]
BLAST of Csa4G130620 vs. NCBI nr
Match: gi|700203455|gb|KGN58588.1| (hypothetical protein Csa_3G695840 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 60/89 (67.42%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1   MLDIGGTFIDQAPNA-----------------------MDLVGSNGVLPIRDLNLSDCNL 60
           MLDI GTFI QAPNA                       MDLVGSNGVLPI DLN SDCNL
Sbjct: 21  MLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSNGVLPITDLNQSDCNL 80

Query: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 67
           VDEDIPDDIKC SLLEILDLSKN FVRLK
Sbjct: 81  VDEDIPDDIKCLSLLEILDLSKNSFVRLK 109

[Close]
BLAST of Csa4G130620 vs. NCBI nr
Match: gi|700196049|gb|KGN51226.1| (hypothetical protein Csa_5G495930 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 58/89 (65.17%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1   MLDIGGTFIDQAPNAM-----------------------DLVGSNGVLPIRDLNLSDCNL 60
           MLD GGTFIDQAPNA+                       DLVGSN VLPIRDLNLSDCN+
Sbjct: 21  MLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVGSNDVLPIRDLNLSDCNI 80

Query: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 67
           VDEDI DDIKC  LLEILDLSKN FVRLK
Sbjct: 81  VDEDIRDDIKCLFLLEILDLSKNSFVRLK 109

[Close]
BLAST of Csa4G130620 vs. NCBI nr
Match: gi|659131386|ref|XP_008465659.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 57/90 (63.33%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 1   MLDIGGTFIDQAPNAM-----------------------DLVG-SNGVLPIRDLNLSDCN 60
           MLDIG TFIDQAP+A+                       +LVG +NG+LPIRDLNLSDCN
Sbjct: 813 MLDIG-TFIDQAPDAIICLRSLETLNCERLSRNIWWSLSNLVGSTNGLLPIRDLNLSDCN 872

Query: 61  LVDEDIPDDIKCFSLLEILDLSKNCFVRLK 67
           LVDEDIPDDIKC  LLEILDLSKN FVRLK
Sbjct: 873 LVDEDIPDDIKCLYLLEILDLSKNSFVRLK 901

[Close]
BLAST of Csa4G130620 vs. NCBI nr
Match: gi|778708803|ref|XP_011656285.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 2   LDIGGTFIDQAPNAMDL------------------VGSNGVLPIRDLNLSDCNLVDEDIP 61
           LDIGGT I   P   +L                  + +  +  + DLNLSDCNLVDEDIP
Sbjct: 829 LDIGGTSISTIPFLENLRILNCERLKSNIWHSLAGLAAQYLRSLNDLNLSDCNLVDEDIP 888

Query: 62  DDIKCFSLLEILDLSKNCFVRL 66
           +D++ FS LEILDLS N F RL
Sbjct: 889 NDLELFSSLEILDLSSNHFERL 910

The following BLAST results are available for this feature:
BLAST of Csa4G130620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZJ1_CUCSA2.1e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130620 PE=4 SV=1[more]
A0A0A0L9U0_CUCSA8.8e-2167.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G695840 PE=4 SV=1[more]
A0A0A0KU16_CUCSA7.4e-2065.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G495930 PE=4 SV=1[more]
A0A0A0KST1_CUCSA1.4e-0746.34Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647550 PE=3 SV=1[more]
M4QW81_CUCME4.2e-0748.78Prv splice variant B OS=Cucumis melo GN=Prv PE=4 SV=1[more]
BLAST of Csa4G130620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198639|gb|KGN53797.1|3.0e-30100.00hypothetical protein Csa_4G130620 [Cucumis sativus][more]
gi|700203455|gb|KGN58588.1|1.3e-2067.42hypothetical protein Csa_3G695840 [Cucumis sativus][more]
gi|700196049|gb|KGN51226.1|1.1e-1965.17hypothetical protein Csa_5G495930 [Cucumis sativus][more]
gi|659131386|ref|XP_008465659.1|2.9e-1763.33PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
gi|778708803|ref|XP_011656285.1|2.1e-0746.34PREDICTED: TMV resistance protein N-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0043531 ADP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G130620.1Csa4G130620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF52047RNI-likecoord: 27..62
score: 2.5