Csa4G126490 (gene) Cucumber (Chinese Long) v2

NameCsa4G126490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionArmadillo/beta-catenin repeat family protein; contains IPR011989 (Armadillo-like helical)
LocationChr4 : 7733828 .. 7734420 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGAATGCTAATGTTGCAAAGGCTAGCAGAAGAAGGTGGAATTGATATTCTTGTACGCCTTGCAAGATCCACGACAGCCTAGTTAAAGAAGAGGCTGCTGAAGAATTGTGGAATCTCTCTGTTGGCGAGGAATACAAAGTGATGTCTACACTTACTGTTTTTCTCTCTCTCTCAAAAGTAGCATTATTGGAGACTCTTAACCTCTAGTTTTGACGATGGATTTTAAAATTGAAATAGGGTGTGATTGTTGAGGCTTGTGGAGTTACAGCTTTAGTCGATTTCATATTTAAATGGTCTTCTAGTGAGGATGGAGTTGTTGTAAGTTTCACTATTTCATTATTTCTTTTCAATTTCCATATGTGTATGACTTGTATATTTCTGTCTTATCTTTTAGTTCCTTATTCTTCTTTAGCATTAACCTTTTATAAGTGATGAATTAAAATCTTCAGAAATCACGACTTTTAATTGTGTTTTACAAGTATTTTCAGGAAGGTGTAATAATTGGTGGTGTGCATGTTTTGGTGATGCTTGCTCGCACAACTTCAAATTTGAAGGAGCAAGGACAGGTGGCCACCTTGTTTCAATAA

mRNA sequence

ATGTCTGTGAATGCTAATATCCACGACAGCCTAGTTAAAGAAGAGGCTGCTGAAGAATTGTGGAATCTCTCTGTTGGCGAGGAATACAAAGGTGTGATTGTTGAGGCTTGTGGAGTTACAGCTTTAGTCGATTTCATATTTAAATGGTCTTCTAGTGAGGATGGAGTTGTTGAAGGTGTAATAATTGGTGGTGTGCATGTTTTGGTGATGCTTGCTCGCACAACTTCAAATTTGAAGGAGCAAGGACAGGTGGCCACCTTGTTTCAATAA

Coding sequence (CDS)

ATGTCTGTGAATGCTAATATCCACGACAGCCTAGTTAAAGAAGAGGCTGCTGAAGAATTGTGGAATCTCTCTGTTGGCGAGGAATACAAAGGTGTGATTGTTGAGGCTTGTGGAGTTACAGCTTTAGTCGATTTCATATTTAAATGGTCTTCTAGTGAGGATGGAGTTGTTGAAGGTGTAATAATTGGTGGTGTGCATGTTTTGGTGATGCTTGCTCGCACAACTTCAAATTTGAAGGAGCAAGGACAGGTGGCCACCTTGTTTCAATAA

Protein sequence

MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGVIIGGVHVLVMLARTTSNLKEQGQVATLFQ*
BLAST of Csa4G126490 vs. Swiss-Prot
Match: ADLO1_ARATH (Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.3e-12
Identity = 52/119 (43.70%), Postives = 58/119 (48.74%), Query Frame = 1

Query: 1   MSVNANIHDS-------------------LVKEEAAEELWNLSVGEEYKGVIVEACGVTA 60
           +SVNANI  S                   LV EEAA  LWNLSVGEE+K  I +A GV A
Sbjct: 465 LSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKA 524

Query: 61  LVDFIFKWSSSEDGVVE---GVI---------------IGGVHVLVMLARTTSNLKEQG 83
           LVD IF+W +  DGV+E   G +                GGVH LVMLAR   N K +G
Sbjct: 525 LVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALVMLAR---NCKYEG 580

BLAST of Csa4G126490 vs. Swiss-Prot
Match: ADLO2_ARATH (Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 45/93 (48.39%), Postives = 48/93 (51.61%), Query Frame = 1

Query: 11  LVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVE---GVI------ 70
           LV EEAA  LWNLSVGEE+K  I +A GV ALVD IF+W    DGV+E   G +      
Sbjct: 485 LVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAAD 544

Query: 71  ---------IGGVHVLVMLARTTSNLKEQGQVA 86
                     GGVH LVMLAR       Q Q A
Sbjct: 545 DKCSMEVARAGGVHALVMLARNCKYEGAQEQAA 577

BLAST of Csa4G126490 vs. TrEMBL
Match: A0A0A0KY48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126490 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1  MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV 60
          MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV
Sbjct: 1  MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV 60

Query: 61 IIGGVHVLVMLARTTSNLKEQGQVATLFQ 90
          IIGGVHVLVMLARTTSNLKEQGQVATLFQ
Sbjct: 61 IIGGVHVLVMLARTTSNLKEQGQVATLFQ 89

BLAST of Csa4G126490 vs. TrEMBL
Match: A0A0B2QL67_GLYSO (Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_037353 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. TrEMBL
Match: A0A0B2QL67_GLYSO (Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_037353 PE=4 SV=1)

HSP 1 Score: 29.3 bits (64), Expect = 3.1e+03
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 12  VKEEAAEELWNLSVGEEYKGVIVEACGVTALVD 45
           V E AA  LWNL+        IVE  GV+ALVD
Sbjct: 703 VHETAAGALWNLAFNASNALRIVEEGGVSALVD 735


HSP 2 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. TrEMBL
Match: A0A0B2PV56_GLYSO (Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_006022 PE=4 SV=1)

HSP 1 Score: 29.3 bits (64), Expect = 3.1e+03
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 12  VKEEAAEELWNLSVGEEYKGVIVEACGVTALVD 45
           V E AA  LWNL+        IVE  GV+ALVD
Sbjct: 703 VHETAAGALWNLAFNASNALRIVEEGGVSALVD 735


HSP 2 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. TrEMBL
Match: A0A151QVW7_CAJCA (Protein ARABIDILLO 1 OS=Cajanus cajan GN=KK1_044527 PE=4 SV=1)

HSP 1 Score: 29.3 bits (64), Expect = 3.1e+03
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 12  VKEEAAEELWNLSVGEEYKGVIVEACGVTALVD 45
           V E AA  LWNL+        IVE  GV+ALVD
Sbjct: 703 VHETAAGALWNLAFNPSNALRIVEEGGVSALVD 735


HSP 2 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. TAIR10
Match: AT2G44900.1 (AT2G44900.1 ARABIDILLO-1)

HSP 1 Score: 70.9 bits (172), Expect = 4.7e-13
Identity = 52/119 (43.70%), Postives = 58/119 (48.74%), Query Frame = 1

Query: 1   MSVNANIHDS-------------------LVKEEAAEELWNLSVGEEYKGVIVEACGVTA 60
           +SVNANI  S                   LV EEAA  LWNLSVGEE+K  I +A GV A
Sbjct: 465 LSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKA 524

Query: 61  LVDFIFKWSSSEDGVVE---GVI---------------IGGVHVLVMLARTTSNLKEQG 83
           LVD IF+W +  DGV+E   G +                GGVH LVMLAR   N K +G
Sbjct: 525 LVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALVMLAR---NCKYEG 580

BLAST of Csa4G126490 vs. TAIR10
Match: AT3G60350.1 (AT3G60350.1 ARABIDILLO-2)

HSP 1 Score: 70.5 bits (171), Expect = 6.1e-13
Identity = 45/93 (48.39%), Postives = 48/93 (51.61%), Query Frame = 1

Query: 11  LVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVE---GVI------ 70
           LV EEAA  LWNLSVGEE+K  I +A GV ALVD IF+W    DGV+E   G +      
Sbjct: 485 LVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAAD 544

Query: 71  ---------IGGVHVLVMLARTTSNLKEQGQVA 86
                     GGVH LVMLAR       Q Q A
Sbjct: 545 DKCSMEVARAGGVHALVMLARNCKYEGAQEQAA 577

BLAST of Csa4G126490 vs. NCBI nr
Match: gi|700198621|gb|KGN53779.1| (hypothetical protein Csa_4G126490 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1  MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV 60
          MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV
Sbjct: 1  MSVNANIHDSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEGV 60

Query: 61 IIGGVHVLVMLARTTSNLKEQGQVATLFQ 90
          IIGGVHVLVMLARTTSNLKEQGQVATLFQ
Sbjct: 61 IIGGVHVLVMLARTTSNLKEQGQVATLFQ 89

BLAST of Csa4G126490 vs. NCBI nr
Match: gi|1012120238|ref|XP_015962179.1| (PREDICTED: protein ARABIDILLO 1-like [Arachis duranensis])

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 483 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLA 542

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 543 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 571

BLAST of Csa4G126490 vs. NCBI nr
Match: gi|356531812|ref|XP_003534470.1| (PREDICTED: protein ARABIDILLO 1-like [Glycine max])

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. NCBI nr
Match: gi|356531812|ref|XP_003534470.1| (PREDICTED: protein ARABIDILLO 1-like [Glycine max])

HSP 1 Score: 29.3 bits (64), Expect = 4.4e+03
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 12  VKEEAAEELWNLSVGEEYKGVIVEACGVTALVD 45
           V E AA  LWNL+        IVE  GV+ALVD
Sbjct: 703 VHETAAGALWNLAFNASNALRIVEEGGVSALVD 735


HSP 2 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 484 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLA 543

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 544 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 572

BLAST of Csa4G126490 vs. NCBI nr
Match: gi|734347991|gb|KHN11569.1| (Protein ARABIDILLO 1 [Glycine soja])

HSP 1 Score: 29.3 bits (64), Expect = 4.4e+03
Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 12  VKEEAAEELWNLSVGEEYKGVIVEACGVTALVD 45
           V E AA  LWNL+        IVE  GV+ALVD
Sbjct: 703 VHETAAGALWNLAFNASNALRIVEEGGVSALVD 735


HSP 2 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 9   DSLVKEEAAEELWNLSVGEEYKGVIVEACGVTALVDFIFKWSSSEDGVVEG--------- 68
           + LV EEAA  LWNLSVGEE+KG I EA G+ ALVD IFKWSSS DGV+E          
Sbjct: 483 NKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLA 542

Query: 69  ---------VIIGGVHVLVMLARTTSNLKEQG 83
                     + GGVH LVMLAR   N K +G
Sbjct: 543 ADDKCSTEVALAGGVHALVMLAR---NCKFEG 571

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADLO1_ARATH8.3e-1243.70Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1[more]
ADLO2_ARATH1.1e-1148.39Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KY48_CUCSA1.6e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126490 PE=4 SV=1[more]
A0A0B2QL67_GLYSO6.8e-1353.26Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_037353 PE=4 SV=1[more]
A0A0B2QL67_GLYSO3.1e+0351.52Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_037353 PE=4 SV=1[more]
A0A0B2PV56_GLYSO3.1e+0351.52Protein ARABIDILLO 1 OS=Glycine soja GN=glysoja_006022 PE=4 SV=1[more]
A0A151QVW7_CAJCA3.1e+0351.52Protein ARABIDILLO 1 OS=Cajanus cajan GN=KK1_044527 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44900.14.7e-1343.70 ARABIDILLO-1[more]
AT3G60350.16.1e-1348.39 ARABIDILLO-2[more]
Match NameE-valueIdentityDescription
gi|700198621|gb|KGN53779.1|2.2e-41100.00hypothetical protein Csa_4G126490 [Cucumis sativus][more]
gi|1012120238|ref|XP_015962179.1|9.8e-1353.26PREDICTED: protein ARABIDILLO 1-like [Arachis duranensis][more]
gi|356531812|ref|XP_003534470.1|9.8e-1353.26PREDICTED: protein ARABIDILLO 1-like [Glycine max][more]
gi|356531812|ref|XP_003534470.1|4.4e+0351.52PREDICTED: protein ARABIDILLO 1-like [Glycine max][more]
gi|734347991|gb|KHN11569.1|4.4e+0351.52Protein ARABIDILLO 1 [Glycine soja][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G126490.1Csa4G126490.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 8..76
score: 3.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None