Csa4G126440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G126440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 7663940 .. 7664396 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTAGTGATTCTTTTTCATAACGATTCTGATTGTAATTCTACTCATTGTGTGATTAATGGTCGTATTTTAGAGCTGGTTGGCGGGAGAAAGTAGAAATCTCTATCTTCTGATTCCATTTTTTAACATGTTTAACACTGACTTCAAATACGCTCTTCCAAAAAACATCTACTTCAACAAAGATTTCTGATTACCTGTGAAGTTCTGTTGTGTTTTTGGATGTGGTTTCATGATGCAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

mRNA sequence

ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

Coding sequence (CDS)

ATGGTCACTATTTTTAACCATTTTATGGTTGGCGTGCAGCTAGGACTCCCTCCTTTCGTTACAGAATCTGAATGTCATGTTTCTTCCAATATTGTGTTACAAGAGACATGTGCAGTCAATGTATGGCTTGAGTTTTTGCTGCTGGTGTTGTTTTGCCTGGTGCTTATGTTGTATGTAAGGTTAGCAGCTTTACATTTTGGTCTCTACCATTATGAAGTGTGA

Protein sequence

MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVRLAALHFGLYHYEV*
Homology
[Close]
BLAST of Csa4G126440 vs. TrEMBL
Match: A0A0A0KY42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126440 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60
          MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFGLYHYEV 74
          LAALHFGLYHYEV
Sbjct: 61 LAALHFGLYHYEV 73

[Close]
BLAST of Csa4G126440 vs. NCBI nr
Match: gi|700198616|gb|KGN53774.1| (hypothetical protein Csa_4G126440 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60
          MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFGLYHYEV 74
          LAALHFGLYHYEV
Sbjct: 61 LAALHFGLYHYEV 73

The following BLAST results are available for this feature:
BLAST of Csa4G126440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY42_CUCSA2.6e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126440 PE=4 SV=1[more]
BLAST of Csa4G126440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198616|gb|KGN53774.1|3.7e-34100.00hypothetical protein Csa_4G126440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU140237cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G126440.1Csa4G126440.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU140237CU140237transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G126440Cucurbita maxima (Rimu)cmacuB262
Csa4G126440Cucurbita maxima (Rimu)cmacuB476
Csa4G126440Cucurbita moschata (Rifu)cmocuB247
Csa4G126440Cucurbita moschata (Rifu)cmocuB465
Csa4G126440Melon (DHL92) v3.5.1cumeB279
Csa4G126440Melon (DHL92) v3.5.1cumeB288
Csa4G126440Melon (DHL92) v3.5.1cumeB316
Csa4G126440Watermelon (Charleston Gray)cuwcgB298
Csa4G126440Watermelon (Charleston Gray)cuwcgB327
Csa4G126440Watermelon (97103) v1cuwmB306
Csa4G126440Watermelon (97103) v1cuwmB337
Csa4G126440Watermelon (97103) v1cuwmB357
Csa4G126440Cucurbita pepo (Zucchini)cpecuB567
Csa4G126440Cucurbita pepo (Zucchini)cpecuB617
Csa4G126440Bottle gourd (USVL1VR-Ls)culsiB272
Csa4G126440Bottle gourd (USVL1VR-Ls)culsiB302
Csa4G126440Bottle gourd (USVL1VR-Ls)culsiB313
Csa4G126440Cucumber (Gy14) v2cgybcuB029
Csa4G126440Cucumber (Gy14) v2cgybcuB165
Csa4G126440Melon (DHL92) v3.6.1cumedB264
Csa4G126440Melon (DHL92) v3.6.1cumedB273
Csa4G126440Melon (DHL92) v3.6.1cumedB300
Csa4G126440Silver-seed gourdcarcuB0721
Csa4G126440Silver-seed gourdcarcuB0834
Csa4G126440Watermelon (97103) v2cuwmbB295
Csa4G126440Watermelon (97103) v2cuwmbB314
Csa4G126440Watermelon (97103) v2cuwmbB324
Csa4G126440Wax gourdcuwgoB369
Csa4G126440Wax gourdcuwgoB413
Csa4G126440Wax gourdcuwgoB427
Csa4G126440Cucumber (Chinese Long) v2cucuB027
Csa4G126440Cucumber (Gy14) v1cgycuB141
Csa4G126440Cucumber (Gy14) v1cgycuB266