Csa4G107500 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G107500
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 6940230 .. 6940679 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGAATTACCAAAATTGCTCTTGCTTCTATTATCTTTACCTCTCCATCATGAACATGGACAGCCGGCACTAATGTTCTCTTTTTCTTCTATCTTCCTCAACCTATGCTCAGGTCTAACCTCGCTCGATGATGTTGCAACATCAGCAGATATGACAAACTCTTCTGACACTACTTTCGTTGCTAAGTTGTGGTCATCCTTGTCTTGTTTGACTTCTTTAATCTTCAATGAACCATCTTCTTCTTTACCAAACAATTCCACTTATGTTGTTGTCTTCTTAGAAAATTTGCTCCTGTCTCAATTGTTTTTGGATGTTAAGAAGGGGTTCTTGAATGTTTCTTGGATTCCTTTGATGCTGTTGGATGTTATTAGGGTTTACCGTTTACCAAATCTTAAAGTTGTTTCTGCCCTTGGTATAATTAATACAATTGAAGAGAAATTTTCTTGA

mRNA sequence

ATGTGGGAATTACCAAAATTGCTCTTGCTTCTATTATCTTTACCTCTCCATCATGAACATGGACAGCCGGCACTAATGTTCTCTTTTTCTTCTATCTTCCTCAACCTATGCTCAGGTCTAACCTCGCTCGATGATGTTGCAACATCAGCAGATATGACAAACTCTTCTGACACTACTTTCGTTGCTAAGTTGTGGTCATCCTTGTCTTGTTTGACTTCTTTAATCTTCAATGAACCATCTTCTTCTTTACCAAACAATTCCACTTATGTTGTTGTCTTCTTAGAAAATTTGCTCCTGTCTCAATTGTTTTTGGATGTTAAGAAGGGGTTCTTGAATGTTTCTTGGATTCCTTTGATGCTGTTGGATGTTATTAGGGTTTACCGTTTACCAAATCTTAAAGTTGTTTCTGCCCTTGGTATAATTAATACAATTGAAGAGAAATTTTCTTGA

Coding sequence (CDS)

ATGTGGGAATTACCAAAATTGCTCTTGCTTCTATTATCTTTACCTCTCCATCATGAACATGGACAGCCGGCACTAATGTTCTCTTTTTCTTCTATCTTCCTCAACCTATGCTCAGGTCTAACCTCGCTCGATGATGTTGCAACATCAGCAGATATGACAAACTCTTCTGACACTACTTTCGTTGCTAAGTTGTGGTCATCCTTGTCTTGTTTGACTTCTTTAATCTTCAATGAACCATCTTCTTCTTTACCAAACAATTCCACTTATGTTGTTGTCTTCTTAGAAAATTTGCTCCTGTCTCAATTGTTTTTGGATGTTAAGAAGGGGTTCTTGAATGTTTCTTGGATTCCTTTGATGCTGTTGGATGTTATTAGGGTTTACCGTTTACCAAATCTTAAAGTTGTTTCTGCCCTTGGTATAATTAATACAATTGAAGAGAAATTTTCTTGA

Protein sequence

MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTFVAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLMLLDVIRVYRLPNLKVVSALGIINTIEEKFS*

Homology

[Close]

BLAST of Csa4G107500 vs. TrEMBL
Match: A0A0A0KXY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107500 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF 60
           MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF
Sbjct: 1   MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF 60

Query: 61  VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML 120
           VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML
Sbjct: 61  VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML 120

Query: 121 LDVIRVYRLPNLKVVSALGIINTIEEKFS 150
           LDVIRVYRLPNLKVVSALGIINTIEEKFS
Sbjct: 121 LDVIRVYRLPNLKVVSALGIINTIEEKFS 149

[Close]

BLAST of Csa4G107500 vs. NCBI nr
Match: gi|700198551|gb|KGN53709.1| (hypothetical protein Csa_4G107500 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.1e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 1   MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF 60
           MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF
Sbjct: 1   MWELPKLLLLLLSLPLHHEHGQPALMFSFSSIFLNLCSGLTSLDDVATSADMTNSSDTTF 60

Query: 61  VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML 120
           VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML
Sbjct: 61  VAKLWSSLSCLTSLIFNEPSSSLPNNSTYVVVFLENLLLSQLFLDVKKGFLNVSWIPLML 120

Query: 121 LDVIRVYRLPNLKVVSALGIINTIEEKFS 150
           LDVIRVYRLPNLKVVSALGIINTIEEKFS
Sbjct: 121 LDVIRVYRLPNLKVVSALGIINTIEEKFS 149

The following BLAST results are available for this feature:

BLAST of Csa4G107500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY1_CUCSA	1.5e-76	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107500 PE=4 SV=1	[more]

BLAST of Csa4G107500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198551\|gb\|KGN53709.1\|	2.1e-76	100.00	hypothetical protein Csa_4G107500 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU162440	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G107500.1	Csa4G107500.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162440	CU162440	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G107500	Cucumber (Gy14) v1	cgycuB556
Csa4G107500	Cucurbita maxima (Rimu)	cmacuB334
Csa4G107500	Cucurbita maxima (Rimu)	cmacuB712
Csa4G107500	Cucurbita moschata (Rifu)	cmocuB326
Csa4G107500	Cucurbita moschata (Rifu)	cmocuB702
Csa4G107500	Melon (DHL92) v3.5.1	cumeB317
Csa4G107500	Watermelon (Charleston Gray)	cuwcgB272
Csa4G107500	Watermelon (97103) v1	cuwmB293
Csa4G107500	Watermelon (97103) v1	cuwmB296
Csa4G107500	Cucurbita pepo (Zucchini)	cpecuB222
Csa4G107500	Cucurbita pepo (Zucchini)	cpecuB403
Csa4G107500	Bottle gourd (USVL1VR-Ls)	culsiB276
Csa4G107500	Cucumber (Gy14) v2	cgybcuB165
Csa4G107500	Melon (DHL92) v3.6.1	cumedB303
Csa4G107500	Silver-seed gourd	carcuB0404
Csa4G107500	Silver-seed gourd	carcuB0887
Csa4G107500	Watermelon (97103) v2	cuwmbB272
Csa4G107500	Wax gourd	cuwgoB358