Csa4G107380 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G107380
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 6842317 .. 6843789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTATTTGGTGTTTTGTTTTGGAAGAACTAAAAGTGATTTTGAAAAAGATTATATTTTTCATTGTTTGGTAAAAGAGATTGTTAGTAAATATATTAAAATAATTTTAGGAATATACGTATATTTTTTTATTATTGTTGAAAGAGATTTTCTAGAAAATATAACAAATGGGTAAAATATTTATACTCTATCAAACAATTTAGTGAAAGGAAAATCTTACCGACCTACAATGTAAAATATCAAAAATACCCTAGTTAACAAGCGATTAATCGACCATATGCATCTAAGTAATTTTATTTTAAACGATCGTGTACTATAGTCTAAATGATGGGTTAGATCATTGTCGCCACGTGCCCAAGACGACGTGGAGCGGCCGACGTCCTCAAAAAAGCTAGTTTTAAAATAAAATAGGAGTCATCGCCAATTTTTTTTACGGTGTGATTGGACACCGAAATAAAATAAACAATTTTAAAAAAATGGTCTGCGAAAAAATTGAGTTGAGTCTGGGAGTCATTTGTGTGTGGGGAAGGTATTAGCACCCCACGACACCCATTTAAATAAACGGTGGCCAAAGTTCAAATCTTGAATTGGAAATATTTTTTTAAATTTATTTTTAAACCAATGTCTTATTTCACCCCTCATTACTCCAATATTTGAAGCAATGATCTCATAAAATAAGTGGAATAATATTCACCCCTCATTACTCCTATATTTGTTTCAATTCGAGTTGTTATGCATGTTGATTACTAAATTTGTTTAGTTGCAATTAGAGTAAAGTTTGATCATTATTCCGTTGCGCATGTCTACTATTTTCAGCATTAAGTTCTCAATTAAATTGAATTTACGGTTCTGTAAAAGTCTTCCGCGTCGAACTATTTTTATCTCTTCAATTGGTATCCGAAGATTTTTTATCTCTTCAATTGGTATCAGAGTCATCTCAATTTTTAATTGAAAATTTTAAAATTTTCATTAGTTTGGTGGAGTTATTATGAATGTATTTTTTTGCAATTATTGAAAGTTTTTCGAAATTTGACCATAAATTTTTCTAGTTTTTGATATGATCAATGGTAAAGGCCCCTTCGTTTTTGGGCATTTTATTTTGTAAATCTTGTAATTTAGAGTCTAAAGTTAGATTTAATATGTTTTTATATGAAAAATGATAGCAAATTCGATCAAAGCGAACCACCAGAGTGCCTCCAATAGAAGATTTTTCGGCTCTACATAGAAACCGAGGCGAGAAAAAATTCAGCAACAGCGCACTAGGGAAGAAGAGGGCTAACGTTAGTGTGACGTCAGCAAACATCAATGACCGGCTCAGGCATGGGATTCAACTCGAATCGGTTTTGGGTTCGCGTGAGGTTAGTTGTGGTTTAGGGCGATTGGCTCTAGTTATACGTGATTCAACTTCTAAAGTGCAGTTGGCTTCGGTTCACCTTGGTTTTGAGCCAATTCTTCTATTTTTCAACTGA

mRNA sequence

ATGGAAAGTATTTGGTGTTTTGTTTTGGAAGAACTAAAACAAATTCGATCAAAGCGAACCACCAGAGTGCCTCCAATAGAAGATTTTTCGGCTCTACATAGAAACCGAGGCGAGAAAAAATTCAGCAACAGCGCACTAGGGAAGAAGAGGGCTAACGTTAGTGTGACGTCAGCAAACATCAATGACCGGCTCAGGCATGGGATTCAACTCGAATCGGTTTTGGGTTCGCGTGAGGTTAGTTGTGGTTTAGGGCGATTGGCTCTAGTTATACGTGATTCAACTTCTAAAGTGCAGTTGGCTTCGGTTCACCTTGGTTTTGAGCCAATTCTTCTATTTTTCAACTGA

Coding sequence (CDS)

ATGGAAAGTATTTGGTGTTTTGTTTTGGAAGAACTAAAACAAATTCGATCAAAGCGAACCACCAGAGTGCCTCCAATAGAAGATTTTTCGGCTCTACATAGAAACCGAGGCGAGAAAAAATTCAGCAACAGCGCACTAGGGAAGAAGAGGGCTAACGTTAGTGTGACGTCAGCAAACATCAATGACCGGCTCAGGCATGGGATTCAACTCGAATCGGTTTTGGGTTCGCGTGAGGTTAGTTGTGGTTTAGGGCGATTGGCTCTAGTTATACGTGATTCAACTTCTAAAGTGCAGTTGGCTTCGGTTCACCTTGGTTTTGAGCCAATTCTTCTATTTTTCAACTGA

Protein sequence

MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANINDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN*
Homology
[Close]
BLAST of Csa4G107380 vs. TrEMBL
Match: A0A0A0L0N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107380 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.9e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI 60
           MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI
Sbjct: 1   MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI 60

Query: 61  NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN 115
           NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN
Sbjct: 61  NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN 114

[Close]
BLAST of Csa4G107380 vs. NCBI nr
Match: gi|700198538|gb|KGN53696.1| (hypothetical protein Csa_4G107380 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI 60
           MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI
Sbjct: 1   MESIWCFVLEELKQIRSKRTTRVPPIEDFSALHRNRGEKKFSNSALGKKRANVSVTSANI 60

Query: 61  NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN 115
           NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN
Sbjct: 61  NDRLRHGIQLESVLGSREVSCGLGRLALVIRDSTSKVQLASVHLGFEPILLFFN 114

The following BLAST results are available for this feature:
BLAST of Csa4G107380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0N6_CUCSA4.9e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107380 PE=4 SV=1[more]
BLAST of Csa4G107380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198538|gb|KGN53696.1|7.0e-56100.00hypothetical protein Csa_4G107380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G107380.1Csa4G107380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G107380Silver-seed gourdcarcuB0404
Csa4G107380Silver-seed gourdcarcuB0887
Csa4G107380Watermelon (97103) v2cuwmbB272
Csa4G107380Wax gourdcuwgoB358
Csa4G107380Cucumber (Gy14) v1cgycuB556
Csa4G107380Cucurbita maxima (Rimu)cmacuB334
Csa4G107380Cucurbita maxima (Rimu)cmacuB712
Csa4G107380Cucurbita moschata (Rifu)cmocuB326
Csa4G107380Cucurbita moschata (Rifu)cmocuB702
Csa4G107380Melon (DHL92) v3.5.1cumeB317
Csa4G107380Watermelon (Charleston Gray)cuwcgB272
Csa4G107380Watermelon (97103) v1cuwmB296
Csa4G107380Cucurbita pepo (Zucchini)cpecuB222
Csa4G107380Cucurbita pepo (Zucchini)cpecuB403
Csa4G107380Bottle gourd (USVL1VR-Ls)culsiB276
Csa4G107380Cucumber (Gy14) v2cgybcuB165
Csa4G107380Melon (DHL92) v3.6.1cumedB303