Csa4G102350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G102350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Xaa-pro dipeptidase, putative
Location	Chr4 : 6675765 .. 6677811 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATTGACATGGTGCAAGGGCTGGTCGCACACGCATGGCCTTCGGGCTTGCTGTGTGCTAACCTCACTAAGGTGAGGTGCGCACTGCATGTTAACCTTGCAATGAGGTTGCCGCACACGTGCTTGCCGTGTGAAACCCAAAATTTCTTTAACCTTTGAAACTTGCTAAGTTTAGTCAAGGATAAGAGAAAATGAATTTTTTTTGGAAAGAAGGTAAAAGTACTTGGATTTTGATTGAAACTTGATTACATGACTAAATTGCACTTCATAATTAATTTAAAATTTTGATTTGACTATTACTTCCATCTCTTTACTTTTAGATTTAACTTATTTTTGTGCCTATGGTTTCAAAATGAGATGTTCAAAAAGTAATTTGATATCCAAATTATTATGGATATATATTTAAATTTAGGTTAATTTCTATAAATATAATAAATTGACAAAATATTTATGGTTCGCGTAAACAAAATGAAAAAGTTAATTAAGCTGGCAATTTTATTTAAATATTCTAGGTTTGCCCTTTCTTTTCATCGTTTTTCTTCTCCTCTTTTCTGCGATTTTTTTCTTCTTTCTATTGTCTTTTTCTCTTCTTTTGAAGTTTTCATTAATTTTTTGTCTCAAACTATTATTTGGTTCAAAATCATGTACCAAATATAAAAAATCTACTTTTTTTAAAAAAAAAATTCAAACTGTAAATTGATTGTTTACATCGACAAATATAAAAGATCGTGAATGATCATGTACCGAAGAATCTTTAAAAAATGATTGTGTGCCAAAAAAATCGTTTATATTTGACTAGCCAAAATCATGTGCCAAAAATCATGTACCGAAGAATCTTTTAAAAATCGTTTAAAAATCGTTTAGATTTAGCTGCCCAAGTGTAAACGATCAAATCTAGACGATTGTACACCAAATATAAATGATCGTATGCCAAATTTAAATGATTGTGTAAAAAAAAAAATCTTGAAAAAAAATCGAATCTAAACTATTGTCTACAAATATTTTTCAAAAAAGAACCATTTAGATTTTTCTATCCAAATTTAAACCATCAAATCTAAACAATTGTGTACTAAATCTAAACGATCCTATACAAAAAATCTTGAAAAATCGTTTAGATTTTGTATGAAAAATGTATGTATGGTTTAAGTAAAATGGAAAGTGTATGTATATGTATGTATAAAGAAAAATATATGTATGTATATTTGGAATTTAGAAATTACATATAGATAATTAACAATGTGTGTATGTATATTTGGAATTTAAAAATTACATACATAGTTATATTACATACAAAATGACATCCTTTTGGTCCATTTGGTCCATAATGTCCAGAGCTACGTTTCACAACTTTTCTACATAAATAGCAATAGTGGATTTGACATGGCTAAATCAGCACAATGTTGGAAAAGAAATCACACAATTCAGCACACTTTTAGTTGGAAACCTAAAAAGTTATATAATTTGTTGATTTTCAAACCTAAAAACTTCAATCAAATTGATCTTAGTGTGTTTTAGCATTTTTGTTAGCTTAAAGTGTTGTTATGTATGCATTTTCTGAGTTGAAATTGTATTTTTTTAGTAGTTTGATGAATACCATAAGTTCATTTAGTCATCCTGCTACTAGATTCTTCCTTCGTCTGTTGGTGCATATTAATTTTATGAAGAGTACATTGCATCTTAATTTGAGCTTTAATTTCGATGTAAATGATCTTAGTACTAGAACACTTAGGCTAGATTGGAATTTGTTTGTTGATAGGATAGACTACTTTGAATAAATTTTAATGTTTTGTTTAACTGGGAAGAGAAATTAAATTTTAGAAAATAGGGTTTTTTTTACTGTGTTTTCTACTTTTTTGTTCAGGAGATCAATACATTTGTAACTGATTTGAATATGCATCCTATTTTGACTAAATGTCGTGCCTTGAAATCAGAACTGGAGCTTGCTCTTATTCAATTTGCCAATGATATTAGCTCAGAAGCTCATGTTCAGGTAACGATTAGCTCGAAGACCTTTACCAAAAGATGGGTTTTAGACTGCGGATGA

mRNA sequence

ATGCCCATTGACATGGTGCAAGGGCTGGTCGCACACGCATGGCCTTCGGGCTTGCTGTGTGCTAACCTCACTAAGGAGATCAATACATTTGTAACTGATTTGAATATGCATCCTATTTTGACTAAATGTCGTGCCTTGAAATCAGAACTGGAGCTTGCTCTTATTCAATTTGCCAATGATATTAGCTCAGAAGCTCATGTTCAGGTAACGATTAGCTCGAAGACCTTTACCAAAAGATGGGTTTTAGACTGCGGATGA

Coding sequence (CDS)

ATGCCCATTGACATGGTGCAAGGGCTGGTCGCACACGCATGGCCTTCGGGCTTGCTGTGTGCTAACCTCACTAAGGAGATCAATACATTTGTAACTGATTTGAATATGCATCCTATTTTGACTAAATGTCGTGCCTTGAAATCAGAACTGGAGCTTGCTCTTATTCAATTTGCCAATGATATTAGCTCAGAAGCTCATGTTCAGGTAACGATTAGCTCGAAGACCTTTACCAAAAGATGGGTTTTAGACTGCGGATGA

Protein sequence

MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLDCG*

Homology

[Close]

BLAST of Csa4G102350 vs. TrEMBL
Match: A0A0A0L0M9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102350 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND 60
          MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND
Sbjct: 1  MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND 60

Query: 61 ISSEAHVQVTISSKTFTKRWVLDCG 86
          ISSEAHVQVTISSKTFTKRWVLDCG
Sbjct: 61 ISSEAHVQVTISSKTFTKRWVLDCG 85

[Close]

BLAST of Csa4G102350 vs. TrEMBL
Match: A0A0A0LWR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G586750 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-12
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+TFVTDLN +HPILT+CR  KSELELALIQFANDISSEAHVQV  + K   K + L+
Sbjct: 155 IDTFVTDLNTLHPILTECRVFKSELELALIQFANDISSEAHVQVMRNVKVGMKEYQLE 212

[Close]

BLAST of Csa4G102350 vs. TrEMBL
Match: A0A022RNF9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004995mg PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+ FV DLN +HPILT+CR LKS LEL+LIQFANDISSEAHV+V   +K   K + L+
Sbjct: 168 IDNFVADLNALHPILTECRVLKSALELSLIQFANDISSEAHVEVMRKTKVGMKEYQLE 225

[Close]

BLAST of Csa4G102350 vs. TrEMBL
Match: A0A022RRQ9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004995mg PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+ FV DLN +HPILT+CR LKS LEL+LIQFANDISSEAHV+V   +K   K + L+
Sbjct: 168 IDNFVADLNALHPILTECRVLKSALELSLIQFANDISSEAHVEVMRKTKVGMKEYQLE 225

[Close]

BLAST of Csa4G102350 vs. TrEMBL
Match: A0A068U4K5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041701001 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I  F  D+N +HPILT+CR LKS+LELALIQFANDISSEAHV+V  ++K   K + L+
Sbjct: 166 IEKFEMDMNTLHPILTECRVLKSDLELALIQFANDISSEAHVEVMRNAKVGMKEYQLE 223

[Close]

BLAST of Csa4G102350 vs. TAIR10
Match: AT4G29490.1 (AT4G29490.1 Metallopeptidase M24 family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-10
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQV 70
           I+ F TDL  +HPIL +CR +KS LEL LIQFANDISSEAH++V
Sbjct: 164 IDKFETDLTTLHPILAECRVIKSSLELQLIQFANDISSEAHIEV 207

[Close]

BLAST of Csa4G102350 vs. NCBI nr
Match: gi|700198528|gb|KGN53686.1| (hypothetical protein Csa_4G102350 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.2e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND 60
          MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND
Sbjct: 1  MPIDMVQGLVAHAWPSGLLCANLTKEINTFVTDLNMHPILTKCRALKSELELALIQFAND 60

Query: 61 ISSEAHVQVTISSKTFTKRWVLDCG 86
          ISSEAHVQVTISSKTFTKRWVLDCG
Sbjct: 61 ISSEAHVQVTISSKTFTKRWVLDCG 85

[Close]

BLAST of Csa4G102350 vs. NCBI nr
Match: gi|659099893|ref|XP_008450826.1| (PREDICTED: xaa-Pro dipeptidase [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-12
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+TFVTDLN +HPILT+CR LKSELELALIQFAND+SSEAHVQV  + K   K + L+
Sbjct: 167 IDTFVTDLNTLHPILTECRVLKSELELALIQFANDVSSEAHVQVMRNIKVGMKEYQLE 224

[Close]

BLAST of Csa4G102350 vs. NCBI nr
Match: gi|778662871|ref|XP_011659966.1| (PREDICTED: xaa-Pro dipeptidase [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+TFVTDLN +HPILT+CR  KSELELALIQFANDISSEAHVQV  + K   K + L+
Sbjct: 167 IDTFVTDLNTLHPILTECRVFKSELELALIQFANDISSEAHVQVMRNVKVGMKEYQLE 224

[Close]

BLAST of Csa4G102350 vs. NCBI nr
Match: gi|700211117|gb|KGN66213.1| (hypothetical protein Csa_1G586750 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+TFVTDLN +HPILT+CR  KSELELALIQFANDISSEAHVQV  + K   K + L+
Sbjct: 155 IDTFVTDLNTLHPILTECRVFKSELELALIQFANDISSEAHVQVMRNVKVGMKEYQLE 212

[Close]

BLAST of Csa4G102350 vs. NCBI nr
Match: gi|848862216|ref|XP_012831899.1| (PREDICTED: xaa-Pro dipeptidase isoform X2 [Erythranthe guttata])

HSP 1 Score: 71.2 bits (173), Expect = 9.7e-10
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 27  INTFVTDLN-MHPILTKCRALKSELELALIQFANDISSEAHVQVTISSKTFTKRWVLD 84
           I+ FV DLN +HPILT+CR LKS LEL+LIQFANDISSEAHV+V   +K   K + L+
Sbjct: 168 IDNFVADLNALHPILTECRVLKSALELSLIQFANDISSEAHVEVMRKTKVGMKEYQLE 225

The following BLAST results are available for this feature:

BLAST of Csa4G102350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0M9_CUCSA	4.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102350 PE=4 SV=1	[more]
A0A0A0LWR5_CUCSA	9.4e-12	70.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G586750 PE=3 SV=1	[more]
A0A022RNF9_ERYGU	6.7e-10	63.79	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004995mg PE=3 SV=1	[more]
A0A022RRQ9_ERYGU	6.7e-10	63.79	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004995mg PE=3 SV=1	[more]
A0A068U4K5_COFCA	2.0e-09	62.07	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041701001 PE=3 SV=1	[more]

BLAST of Csa4G102350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29490.1	3.5e-10	68.18	Metallopeptidase M24 family protein	[more]

BLAST of Csa4G102350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198528\|gb\|KGN53686.1\|	6.2e-41	100.00	hypothetical protein Csa_4G102350 [Cucumis sativus]	[more]
gi\|659099893\|ref\|XP_008450826.1\|	6.1e-12	70.69	PREDICTED: xaa-Pro dipeptidase [Cucumis melo]	[more]
gi\|778662871\|ref\|XP_011659966.1\|	1.3e-11	70.69	PREDICTED: xaa-Pro dipeptidase [Cucumis sativus]	[more]
gi\|700211117\|gb\|KGN66213.1\|	1.3e-11	70.69	hypothetical protein Csa_1G586750 [Cucumis sativus]	[more]
gi\|848862216\|ref\|XP_012831899.1\|	9.7e-10	63.79	PREDICTED: xaa-Pro dipeptidase isoform X2 [Erythranthe guttata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004177	aminopeptidase activity
molecular_function	GO:0030145	manganese ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G102350.1	Csa4G102350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G102350	CSPI04G09070	Wild cucumber (PI 183967)	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G102350	Bottle gourd (USVL1VR-Ls)	culsiB309
Csa4G102350	Cucumber (Gy14) v2	cgybcuB165
Csa4G102350	Melon (DHL92) v3.6.1	cumedB288
Csa4G102350	Melon (DHL92) v3.6.1	cumedB303
Csa4G102350	Watermelon (97103) v2	cuwmbB320
Csa4G102350	Wax gourd	cuwgoB375
Csa4G102350	Cucumber (Gy14) v1	cgycuB556
Csa4G102350	Melon (DHL92) v3.5.1	cumeB303
Csa4G102350	Melon (DHL92) v3.5.1	cumeB317
Csa4G102350	Watermelon (97103) v1	cuwmB317