Csa4G083670 (gene) Cucumber (Chinese Long) v2

NameCsa4G083670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 5726460 .. 5727571 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGTTCGTGTTCTTCTTTCCTTCTCCTAACATCTTCTTTTTCATTCAGCTGTATTGGTTCATCACTCTAAAGTTTTGCCACTGATTTCTTGGTTGTATTGACTGACTTTTAATTTGTAGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGGTATTTTGTTTCCCATATAAATTCCTTATGATGTTCTTGGAGATTATTTAAAATCACCTATGATTCACATAATCACAGAAGCTACAACTCTTGTTATTGCTTTTTGTCTTTTCTAACTCTTAAATTCAACAATGGTAGTGTAATAAACCAAATCATCTACTTCTGGGATTAATATTATAAAAAAGGCCCAAGTATAGATATGGAAACCTACAAGGATGCATTTATTTAAATATATATTTATTCTTAAGCAAAATGAATTATTTTCATATTCTTACTTTGAAATTTTGGCCATGGCTCATGTGCTTTTGGATGTTTATTAATGTCGAAATTTATATTTGAATGACTTTTGGTCAGAAGCATATACCATATAGTTGTTTTACATTAAGATAATAAAACACTATTAACATCTGTTTTTACATGTTTTTTTCCTTCTTATAATTATGATGCAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

mRNA sequence

ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

Coding sequence (CDS)

ATGGAAGATCCTATTCATGTGGCTTCATTATCAGAAATTGGTTGCAATGAATTTGGGAGCAATATGTTGCCAAATAAAGCTTTTTCTGTCTATTATGCTGCACTTCATAATGATGAGAATGATATAATCAAAGGGAATTATGATTGGATTAGTTCTCACATTGACTCAGATGGAAACTACTCTTCTAATTTTGTCTCATCAATCGACTCGTTTGGGTCATTGGAAGACTACGAATCTACTGACTTCAACAAGGAAGCAAACGATTTGTCTCATCAAGTGGAGCTTGAAGATAACTGTGTCATCGTGGATTATCATGATGATGTCTCTAGTGAACCCCCAAACCAACCTTCATTTAAGAGAACAATATCGAATGCTTTCTTTTCCATAAAGAGGTTGGCAATGGAGTACAAACAGCTAGCTATTTTGAAAGGATATGATGCAACAAAGAGCTGCCAAGGAACAAGTTTGGCTGCTCCACATACAATGCTTTTGAGGGATTCTGATCAAACAATTCAATCAAGTGACTCTGAATGGGAGCTTCTTTGA

Protein sequence

MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNYSSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL*
BLAST of Csa4G083670 vs. TrEMBL
Match: A0A0A0KVL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083670 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 8.7e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1

Query: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60
           MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY
Sbjct: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60

Query: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120
           SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR
Sbjct: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120

Query: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180
           TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL
Sbjct: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180

Query: 181 L 182
           L
Sbjct: 181 L 181

BLAST of Csa4G083670 vs. TrEMBL
Match: B9GGV2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38590g PE=4 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.8e-08
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = 1

Query: 58  GNYSSNFVSSIDSFGSLEDY---ESTDFNKEANDLSHQVELEDNCVIVD--YHDDVSSEP 117
           G  SSN V S+ S G  +D    + T+   E  DLS  V+L+++CVIVD  +  +VS   
Sbjct: 343 GLASSNSVLSLVSIGCSDDSAIEDLTESEMENIDLSENVKLDESCVIVDNSFLYEVSRRN 402

Query: 118 PNQPSFKRTISNAFFSIKRLAMEYKQLAI----LKGYDATKSCQGTSLAAPHTMLLRDSD 177
               S+K+ I +AF S KRL  EY+QLAI    L G+D  +      L++  T+ L    
Sbjct: 403 RRLRSYKKKIQDAFSSKKRLTKEYEQLAIWFGDLDGHDTMQH----ELSSSTTITL--DP 462

Query: 178 QTIQSSDSEWELL 182
           QT    DSEWELL
Sbjct: 463 QTNWRQDSEWELL 469

BLAST of Csa4G083670 vs. TrEMBL
Match: A0A068UEC7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021327001 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.6e-07
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1

Query: 56  SDGNYSSNFVSSIDSFGS---------LEDYES--TDFNKEANDLSHQVELEDNCVIVDY 115
           S  + SS   S +DSFG+         ++D  S  +D + E  DLS + +LE++CVIVD 
Sbjct: 688 SSADSSSTDKSMLDSFGNKLQQSFEGIVDDSVSDISDADMETIDLSDKAKLEESCVIVDN 747

Query: 116 H--DDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKG-YDATKSCQGTSLAAPHT 175
                 S  P    S+K+ I  AF S KR+  EY+QL+I  G  D+  S       +PH 
Sbjct: 748 ELLYAASCRPRKFRSYKKLIQEAFASRKRIIKEYEQLSIWYGDIDSDTSFHSDQHLSPHM 807

Query: 176 MLLRDSDQTIQSSDSEWELL 182
                  Q     +SEWELL
Sbjct: 808 KSASRPSQARDLGESEWELL 827

BLAST of Csa4G083670 vs. TrEMBL
Match: A0A151SWU7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014681 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.6e-07
Identity = 56/143 (39.16%), Postives = 76/143 (53.15%), Query Frame = 1

Query: 51  SSHIDSDGNYSSNFVSSIDSFGSLEDYESTDFNK--EANDL----SHQVELEDNCVIVDY 110
           S +  S G+   +  SSI+S   LED +  D  K  E+ DL    S  ++LE +CV VD 
Sbjct: 369 SGYCQSMGSDDKSLASSIESI--LEDIQLNDDPKLEESCDLKLEESCDLKLEQSCVFVDD 428

Query: 111 HD--DVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTS--LAAPH 170
            +   VSS      S+K+ I +AF S KRLA EY+QLAI  G    +  QG+S  L    
Sbjct: 429 SELYAVSSRAQKLRSYKKRIKDAFASKKRLAKEYEQLAIWYGDTDIEPSQGSSQILLPFG 488

Query: 171 TMLLRDSD--QTIQSSDSEWELL 182
           +    DS   Q  Q+S++EWELL
Sbjct: 489 SRKYMDSKNLQVQQASETEWELL 509

BLAST of Csa4G083670 vs. TrEMBL
Match: V4UL38_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008068mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 55/163 (33.74%), Postives = 76/163 (46.63%), Query Frame = 1

Query: 34  ALHNDENDIIKGNYDWISSHIDSD------GNYSSNFVSSIDSFGSLEDY-ESTDFN-KE 93
           +L + E ++ + NY    S I         G   S   +     G   DY +  D++  E
Sbjct: 344 SLESSEEEVSRTNYTTSLSGISQKTNCEFCGTAQSEASAISPDNGHSHDYGDDLDYSGME 403

Query: 94  ANDLSHQVELEDNCVIVDYHD--DVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILK 153
             +LS  VELED+C++VD +    VS       SFK+ I  AF   KRLA EY+QLAI  
Sbjct: 404 TIELSDNVELEDSCILVDNNALYAVSYRTRKLMSFKKRIQEAFVPKKRLAKEYEQLAIWF 463

Query: 154 GYDATKSCQGTSL-----AAPHTMLLRDSDQTIQSSDSEWELL 182
           G DA    +  +L     A     L  ++ +T    DSEWELL
Sbjct: 464 G-DAYMGPEQNTLQNLLPATSSATLESENSRTRHICDSEWELL 505

BLAST of Csa4G083670 vs. NCBI nr
Match: gi|778697544|ref|XP_011654345.1| (PREDICTED: uncharacterized protein LOC105435348 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.2e-99
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1

Query: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60
           MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY
Sbjct: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60

Query: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120
           SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR
Sbjct: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYHDDVSSEPPNQPSFKR 120

Query: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180
           TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL
Sbjct: 121 TISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWEL 180

Query: 181 L 182
           L
Sbjct: 181 L 181

BLAST of Csa4G083670 vs. NCBI nr
Match: gi|659102442|ref|XP_008452132.1| (PREDICTED: uncharacterized protein LOC103493231 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.6e-81
Identity = 154/185 (83.24%), Postives = 164/185 (88.65%), Query Frame = 1

Query: 1   MEDPIHVASLSEIGCNEFGSNMLPNKAFSVYYAALHNDENDIIKGNYDWISSHIDSDGNY 60
           MEDPIHVAS SEI CNE GSNMLPNKAF+VYYAALHNDEN+IIKGNYD I+SHIDS GNY
Sbjct: 33  MEDPIHVASSSEISCNEIGSNMLPNKAFAVYYAALHNDENEIIKGNYDRITSHIDSGGNY 92

Query: 61  SSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDY----HDDVSSEPPNQP 120
            SNF SSI+SFGSLEDYES DFNKEANDLSHQV LEDNCVIVDY    HDDVS+EPPNQP
Sbjct: 93  CSNFSSSINSFGSLEDYESADFNKEANDLSHQVVLEDNCVIVDYSTIPHDDVSTEPPNQP 152

Query: 121 SFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDS 180
           SFKRTI NA F  KRLAMEYK+L IL+G++ATK CQG SLAAP TMLL+DSDQTIQSSDS
Sbjct: 153 SFKRTILNALFPKKRLAMEYKKLVILEGHNATKCCQGASLAAPRTMLLKDSDQTIQSSDS 212

Query: 181 EWELL 182
           EWELL
Sbjct: 213 EWELL 217

BLAST of Csa4G083670 vs. NCBI nr
Match: gi|694413900|ref|XP_009335193.1| (PREDICTED: uncharacterized protein LOC103927937 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 70  SFGSLEDYESTDFNK---EANDLSHQVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISN 129
           +FGS  D  S+DF++   E  DL  +V+LE++CVIVD      VSS    Q S+K+ I +
Sbjct: 439 AFGS-SDESSSDFSRSSMETIDLHDKVKLEESCVIVDDSVLHAVSSRARKQRSYKKRIQD 498

Query: 130 AFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
           AF S KRLA EY+QLAI  G    ++ Q        T+    S +T  + DSEWELL
Sbjct: 499 AFTSKKRLAKEYEQLAIWFGDSHIETSQ-------QTLSNVKSLETDDACDSEWELL 547

BLAST of Csa4G083670 vs. NCBI nr
Match: gi|694413903|ref|XP_009335195.1| (PREDICTED: uncharacterized protein LOC103927937 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 70  SFGSLEDYESTDFNK---EANDLSHQVELEDNCVIVDYH--DDVSSEPPNQPSFKRTISN 129
           +FGS  D  S+DF++   E  DL  +V+LE++CVIVD      VSS    Q S+K+ I +
Sbjct: 438 AFGS-SDESSSDFSRSSMETIDLHDKVKLEESCVIVDDSVLHAVSSRARKQRSYKKRIQD 497

Query: 130 AFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLLRDSDQTIQSSDSEWELL 182
           AF S KRLA EY+QLAI  G    ++ Q        T+    S +T  + DSEWELL
Sbjct: 498 AFTSKKRLAKEYEQLAIWFGDSHIETSQ-------QTLSNVKSLETDDACDSEWELL 546

BLAST of Csa4G083670 vs. NCBI nr
Match: gi|657980192|ref|XP_008382079.1| (PREDICTED: uncharacterized protein LOC103444896 isoform X2 [Malus domestica])

HSP 1 Score: 65.9 bits (159), Expect = 8.6e-08
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 1

Query: 47  YDWISSHIDSDGNYSSNFVSSIDSFGSLEDYESTDFNKEANDLSHQVELEDNCVIVDYH- 106
           YD +   +D   +  S+   S  S  +++ ++     + + D   +V+LE++CVIVD   
Sbjct: 601 YDALKPSLDIGSSDESSSDFSRSSMETIDLHDKVKLEERSVDFHDKVQLEESCVIVDDSV 660

Query: 107 -DDVSSEPPNQPSFKRTISNAFFSIKRLAMEYKQLAILKGYDATKSCQGTSLAAPHTMLL 166
              VSS    Q S+K+ I +AF S KRLA EYKQLAI  G    ++ Q        T+  
Sbjct: 661 LHAVSSRARKQRSYKKRIQDAFTSKKRLAKEYKQLAIWFGDSHIETSQ-------QTLSN 720

Query: 167 RDSDQTIQSSDSEWELL 182
             S +T  + DS WELL
Sbjct: 721 VKSSETDDACDSXWELL 730

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KVL5_CUCSA8.7e-100100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083670 PE=4 SV=1[more]
B9GGV2_POPTR7.8e-0839.85Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38590g PE=4 SV=2[more]
A0A068UEC7_COFCA6.6e-0735.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021327001 PE=4 SV=1[more]
A0A151SWU7_CAJCA8.6e-0739.16Uncharacterized protein OS=Cajanus cajan GN=KK1_014681 PE=4 SV=1[more]
V4UL38_9ROSI2.5e-0633.74Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008068mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778697544|ref|XP_011654345.1|1.2e-99100.00PREDICTED: uncharacterized protein LOC105435348 [Cucumis sativus][more]
gi|659102442|ref|XP_008452132.1|7.6e-8183.24PREDICTED: uncharacterized protein LOC103493231 [Cucumis melo][more]
gi|694413900|ref|XP_009335193.1|6.6e-0842.74PREDICTED: uncharacterized protein LOC103927937 isoform X1 [Pyrus x bretschneide... [more]
gi|694413903|ref|XP_009335195.1|6.6e-0842.74PREDICTED: uncharacterized protein LOC103927937 isoform X2 [Pyrus x bretschneide... [more]
gi|657980192|ref|XP_008382079.1|8.6e-0834.31PREDICTED: uncharacterized protein LOC103444896 isoform X2 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G083670.1Csa4G083670.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34659FAMILY NOT NAMEDcoord: 88..181
score: 5.4
NoneNo IPR availablePANTHERPTHR34659:SF1F3N23.33 PROTEINcoord: 88..181
score: 5.4

The following gene(s) are paralogous to this gene:

None