Csa4G083580 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G083580
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 5657709 .. 5658236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCCACCTCCATCGCTCTAAAGACTCACGATCCATCTCAGATCTCATTTCTCTCAACTCACTTTCACGTCCCTCCATCCTTGACCCGCCACCCTTCCAACCTCCGTCTCACCTCTCTGACTTTCACTTCACGGCTCCTCCTACAGCCGGCGTCCAGCACCGTTTCCACCGCCTTCGGATCCGTACAGCGACGCAACACAAACCCTTTGTTCGGGTTTTGGATTCTTGGTTAGATCTTTGTTCAAATTTTGTTTATCTGGTGTTTTTTTATTTATTTTTTATTTTACATTTTTTAACAAAATCTCTCTGACTCTCACCTCACGGCTCCACCTCAATTACTTCATGTTCCGTTTTGTTAATCAATTTTGTTAAACTAAGTGTGAGCGATCAATTGGTTTGACTTGTTTGATTTTTTGTAATGAATGGTTGGGTTTCTCTTTGTGGGGTGTTGGGGAAAGATTGGAGATGGCGGGAGATGCTGGTCAAATGGATTTGATTACAAGGTGTTTGTGAAAATGTCTTAA

mRNA sequence

ATGCTACCCACCTCCATCGCTCTAAAGACTCACGATCCATCTCAGATCTCATTTCTCTCAACTCACTTTCACGTCCCTCCATCCTTGACCCGCCACCCTTCCAACCTCCGTCTCACCTCTCTGACTTTCACTTCACGGCTCCTCCTACAGCCGGCGTCCAGCACCGTTTCCACCGCCTTCGGATCCATTGGAGATGGCGGGAGATGCTGGTCAAATGGATTTGATTACAAGGTGTTTGTGAAAATGTCTTAA

Coding sequence (CDS)

ATGCTACCCACCTCCATCGCTCTAAAGACTCACGATCCATCTCAGATCTCATTTCTCTCAACTCACTTTCACGTCCCTCCATCCTTGACCCGCCACCCTTCCAACCTCCGTCTCACCTCTCTGACTTTCACTTCACGGCTCCTCCTACAGCCGGCGTCCAGCACCGTTTCCACCGCCTTCGGATCCATTGGAGATGGCGGGAGATGCTGGTCAAATGGATTTGATTACAAGGTGTTTGTGAAAATGTCTTAA

Protein sequence

MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAFGSIGDGGRCWSNGFDYKVFVKMS*
Homology
[Close]
BLAST of Csa4G083580 vs. TrEMBL
Match: A0A0A0KXL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083580 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF 60
          MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF
Sbjct: 1  MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF 60

Query: 61 GSIGDGGRCWSNGFDYKVFVKMS 84
          GSIGDGGRCWSNGFDYKVFVKMS
Sbjct: 61 GSIGDGGRCWSNGFDYKVFVKMS 83

[Close]
BLAST of Csa4G083580 vs. NCBI nr
Match: gi|700198426|gb|KGN53584.1| (hypothetical protein Csa_4G083580 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF 60
          MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF
Sbjct: 1  MLPTSIALKTHDPSQISFLSTHFHVPPSLTRHPSNLRLTSLTFTSRLLLQPASSTVSTAF 60

Query: 61 GSIGDGGRCWSNGFDYKVFVKMS 84
          GSIGDGGRCWSNGFDYKVFVKMS
Sbjct: 61 GSIGDGGRCWSNGFDYKVFVKMS 83

The following BLAST results are available for this feature:
BLAST of Csa4G083580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXL8_CUCSA4.7e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083580 PE=4 SV=1[more]
BLAST of Csa4G083580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198426|gb|KGN53584.1|6.7e-40100.00hypothetical protein Csa_4G083580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103827cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G083580.1Csa4G083580.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103827CU103827transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G083580CSPI04G08020Wild cucumber (PI 183967)cpicuB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G083580Silver-seed gourdcarcuB0045
Csa4G083580Silver-seed gourdcarcuB0046
Csa4G083580Silver-seed gourdcarcuB0047
Csa4G083580Silver-seed gourdcarcuB0340
Csa4G083580Silver-seed gourdcarcuB0677
Csa4G083580Watermelon (97103) v2cuwmbB282
Csa4G083580Watermelon (97103) v2cuwmbB321
Csa4G083580Wax gourdcuwgoB365
Csa4G083580Wax gourdcuwgoB424
Csa4G083580Cucumber (Gy14) v1cgycuB389
Csa4G083580Cucurbita maxima (Rimu)cmacuB337
Csa4G083580Cucurbita maxima (Rimu)cmacuB480
Csa4G083580Cucurbita maxima (Rimu)cmacuB708
Csa4G083580Cucurbita maxima (Rimu)cmacuB715
Csa4G083580Cucurbita moschata (Rifu)cmocuB325
Csa4G083580Cucurbita moschata (Rifu)cmocuB468
Csa4G083580Cucurbita moschata (Rifu)cmocuB699
Csa4G083580Cucurbita moschata (Rifu)cmocuB706
Csa4G083580Melon (DHL92) v3.5.1cumeB311
Csa4G083580Melon (DHL92) v3.5.1cumeB314
Csa4G083580Watermelon (Charleston Gray)cuwcgB282
Csa4G083580Watermelon (Charleston Gray)cuwcgB324
Csa4G083580Watermelon (97103) v1cuwmB314
Csa4G083580Watermelon (97103) v1cuwmB353
Csa4G083580Cucurbita pepo (Zucchini)cpecuB221
Csa4G083580Cucurbita pepo (Zucchini)cpecuB399
Csa4G083580Cucurbita pepo (Zucchini)cpecuB409
Csa4G083580Cucurbita pepo (Zucchini)cpecuB570
Csa4G083580Bottle gourd (USVL1VR-Ls)culsiB287
Csa4G083580Bottle gourd (USVL1VR-Ls)culsiB305
Csa4G083580Cucumber (Gy14) v2cgybcuB165
Csa4G083580Cucumber (Gy14) v2cgybcuB170
Csa4G083580Melon (DHL92) v3.6.1cumedB296
Csa4G083580Melon (DHL92) v3.6.1cumedB299