Csa4G083520 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G083520
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 5624358 .. 5624597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

mRNA sequence

ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

Coding sequence (CDS)

ATGGTTGATACGGCTATTGAAAAAATTGGTATTTTGAAGACACCACCTGTAAAACCAGTCGAACTATCCTTATGTTCTTCTGCTCTTCTCGAGGAGATTCGTCGAGCCAAGATGAAAGTGGATGGCAAAGACATCGAGAACCCTCTCTCCAAAGGAGGTGTCTGTCCTACAGTGCCTTCGACGAAGGTTACATCCATGCATGCTCTCTCTCAAGATTTTCGAGCCACCTCTATGAAATAG

Protein sequence

MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHALSQDFRATSMK*
Homology
[Close]
BLAST of Csa4G083520 vs. TrEMBL
Match: A0A0A0KYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083520 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 8.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 61 TKVTSMHALSQDFRATSMK 80
          TKVTSMHALSQDFRATSMK
Sbjct: 61 TKVTSMHALSQDFRATSMK 79

[Close]
BLAST of Csa4G083520 vs. TrEMBL
Match: A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73

Query: 61 TKVTSMHALSQDFR---ATSMK 80
          TK TSMH   + +     TSMK
Sbjct: 74 TKATSMHTPLKIYEPPLGTSMK 95

[Close]
BLAST of Csa4G083520 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 1   MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
           +VD+A E++G  KTP  KP E SLC SAL EEIRR KM V GKD+E+  SK GVCP    
Sbjct: 402 VVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKAFL 461

Query: 61  TKVTSMHA 69
            KV+S HA
Sbjct: 462 PKVSSTHA 469

[Close]
BLAST of Csa4G083520 vs. TrEMBL
Match: A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 13  KTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHA---L 72
           KTP  KPV++SL  SALLEEIRR KMKV GKDIEN  S+GG  P V S K TSMHA   +
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 73  SQDFRATSMK 80
           S+    TSMK
Sbjct: 93  SEPPLGTSMK 102

[Close]
BLAST of Csa4G083520 vs. TrEMBL
Match: A0A0A0LU69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G368490 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSK 52
          M DTAIE++GILKTP  KPVE+SL  SALLEEIR  KMKV GKDI+NP S+
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

[Close]
BLAST of Csa4G083520 vs. NCBI nr
Match: gi|700198419|gb|KGN53577.1| (hypothetical protein Csa_4G083520 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS
Sbjct: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60

Query: 61 TKVTSMHALSQDFRATSMK 80
          TKVTSMHALSQDFRATSMK
Sbjct: 61 TKVTSMHALSQDFRATSMK 79

[Close]
BLAST of Csa4G083520 vs. NCBI nr
Match: gi|700199594|gb|KGN54752.1| (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
          M DT IE++ ILKTP  K VE+SL  SALLEEIR+ KMKV GKDI+NP S+GGVCP VPS
Sbjct: 14 MADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDIKNPPSRGGVCPIVPS 73

Query: 61 TKVTSMHALSQDFR---ATSMK 80
          TK TSMH   + +     TSMK
Sbjct: 74 TKATSMHTPLKIYEPPLGTSMK 95

[Close]
BLAST of Csa4G083520 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.8 bits (190), Expect = 9.6e-12
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 1   MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPS 60
           +VD+A E++G  KTP  KP E SLC SAL EEIRR KM V GKD+E+  SK GVCP    
Sbjct: 402 VVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKAFL 461

Query: 61  TKVTSMHA 69
            KV+S HA
Sbjct: 462 PKVSSTHA 469

[Close]
BLAST of Csa4G083520 vs. NCBI nr
Match: gi|700195620|gb|KGN50797.1| (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 13  KTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSKGGVCPTVPSTKVTSMHA---L 72
           KTP  KPV++SL  SALLEEIRR KMKV GKDIEN  S+GG  P V S K TSMHA   +
Sbjct: 33  KTPAAKPVKVSLRPSALLEEIRRGKMKVGGKDIENLPSRGGAYPIVSSMKATSMHAPLKI 92

Query: 73  SQDFRATSMK 80
           S+    TSMK
Sbjct: 93  SEPPLGTSMK 102

[Close]
BLAST of Csa4G083520 vs. NCBI nr
Match: gi|700210257|gb|KGN65353.1| (hypothetical protein Csa_1G368490 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MVDTAIEKIGILKTPPVKPVELSLCSSALLEEIRRAKMKVDGKDIENPLSK 52
          M DTAIE++GILKTP  KPVE+SL  SALLEEIR  KMKV GKDI+NP S+
Sbjct: 1  MADTAIEEVGILKTPATKPVEVSLHPSALLEEIRLGKMKVGGKDIKNPPSR 51

The following BLAST results are available for this feature:
BLAST of Csa4G083520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYX3_CUCSA8.7e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083520 PE=4 SV=1[more]
A0A0A0L2B5_CUCSA1.4e-1763.41Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1[more]
E5GCB9_CUCME6.7e-1258.82Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQU9_CUCSA1.5e-1162.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1[more]
A0A0A0LU69_CUCSA1.6e-1072.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G368490 PE=4 SV=1[more]
BLAST of Csa4G083520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198419|gb|KGN53577.1|1.2e-35100.00hypothetical protein Csa_4G083520 [Cucumis sativus][more]
gi|700199594|gb|KGN54752.1|2.0e-1763.41hypothetical protein Csa_4G444640 [Cucumis sativus][more]
gi|307136292|gb|ADN34118.1|9.6e-1258.82hypothetical protein [Cucumis melo subsp. melo][more]
gi|700195620|gb|KGN50797.1|2.1e-1162.86hypothetical protein Csa_5G264300 [Cucumis sativus][more]
gi|700210257|gb|KGN65353.1|2.4e-1072.55hypothetical protein Csa_1G368490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G083520.1Csa4G083520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G083520Melon (DHL92) v3.5.1cumeB311
Csa4G083520Melon (DHL92) v3.5.1cumeB314
Csa4G083520Watermelon (Charleston Gray)cuwcgB282
Csa4G083520Watermelon (Charleston Gray)cuwcgB324
Csa4G083520Watermelon (97103) v1cuwmB314
Csa4G083520Watermelon (97103) v1cuwmB353
Csa4G083520Cucurbita pepo (Zucchini)cpecuB221
Csa4G083520Cucurbita pepo (Zucchini)cpecuB399
Csa4G083520Cucurbita pepo (Zucchini)cpecuB409
Csa4G083520Cucurbita pepo (Zucchini)cpecuB570
Csa4G083520Bottle gourd (USVL1VR-Ls)culsiB287
Csa4G083520Bottle gourd (USVL1VR-Ls)culsiB305
Csa4G083520Cucumber (Gy14) v2cgybcuB165
Csa4G083520Cucumber (Gy14) v2cgybcuB170
Csa4G083520Melon (DHL92) v3.6.1cumedB296
Csa4G083520Melon (DHL92) v3.6.1cumedB299
Csa4G083520Silver-seed gourdcarcuB0045
Csa4G083520Silver-seed gourdcarcuB0046
Csa4G083520Silver-seed gourdcarcuB0047
Csa4G083520Silver-seed gourdcarcuB0340
Csa4G083520Silver-seed gourdcarcuB0677
Csa4G083520Watermelon (97103) v2cuwmbB282
Csa4G083520Watermelon (97103) v2cuwmbB321
Csa4G083520Wax gourdcuwgoB365
Csa4G083520Wax gourdcuwgoB424
Csa4G083520Cucumber (Gy14) v1cgycuB389
Csa4G083520Cucurbita maxima (Rimu)cmacuB337
Csa4G083520Cucurbita maxima (Rimu)cmacuB480
Csa4G083520Cucurbita maxima (Rimu)cmacuB708
Csa4G083520Cucurbita maxima (Rimu)cmacuB715
Csa4G083520Cucurbita moschata (Rifu)cmocuB325
Csa4G083520Cucurbita moschata (Rifu)cmocuB468
Csa4G083520Cucurbita moschata (Rifu)cmocuB699
Csa4G083520Cucurbita moschata (Rifu)cmocuB706