Csa4G056690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G056690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	AAA-type ATPase family protein; contains IPR009060 (UBA-like)
Location	Chr4 : 4846081 .. 4846495 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAATAAAGGTTTGATAGTAGAAATATTCATTTCCTCTTTTTTCATTTTTCTATTCCAATAGAGCGAGAGAGAGAGAGAGATCACCGGTTTCATCATCGCCAGCTTCCAACAACAACAACAACAAGAAGAAGAGGAAGAAGAACGATTTGATTTCGATTTCAATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCAAACTCGACCGCTTCTTCCATTTCCAGCCCCGCCCACCTCCCCCCTCCGCCTCCCACGTCCAATAA

mRNA sequence

ATGAGGAATAAAGCTTCCAACAACAACAACAACAAGAAGAAGAGGAAGAAGAACGATTTGATTTCGATTTCAATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCAAACTCGACCGCTTCTTCCATTTCCAGCCCCGCCCACCTCCCCCCTCCGCCTCCCACGTCCAATAA

Coding sequence (CDS)

ATGAGGAATAAAGCTTCCAACAACAACAACAACAAGAAGAAGAGGAAGAAGAACGATTTGATTTCGATTTCAATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCAAACTCGACCGCTTCTTCCATTTCCAGCCCCGCCCACCTCCCCCCTCCGCCTCCCACGTCCAATAA

Protein sequence

MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ*

Homology

[Close]

BLAST of Csa4G056690 vs. TrEMBL
Match: A0A0A0KV66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056690 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW 60
           MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW
Sbjct: 1   MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW 60

Query: 61  ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ 107
           ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ
Sbjct: 61  ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ 106

[Close]

BLAST of Csa4G056690 vs. TrEMBL
Match: A0A061DKG2_THECC (AAA-type ATPase family protein OS=Theobroma cacao GN=TCM_002075 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-20
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPN-LPISSNPNLQPK 87
           EM+QL++MGFP ELAAQALAATGGKSTLKATEWIL+HKSS+P+P PN  P  + P  QPK
Sbjct: 2   EMQQLLSMGFPSELAAQALAATGGKSTLKATEWILSHKSSNPNPNPNPNPNPTPPPFQPK 61

Query: 88  LDRFFHFQPRPP--PPS 102
           LDRFFH   + P  PPS
Sbjct: 62  LDRFFHLHTKLPNSPPS 78

[Close]

BLAST of Csa4G056690 vs. TrEMBL
Match: A0A067E4V2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008664mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-20
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPS---------PKPNLPIS 87
           EMEQL++MGFPDELAA+ALAATGGKSTLKATEWIL+HKSS+ +         P PN   +
Sbjct: 2   EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPN 61

Query: 88  SNPNLQPKLDRFFHFQPRPPPPSASHVQ 107
            NP +QPKLDRFFHFQ +P   +A+ VQ
Sbjct: 62  QNP-VQPKLDRFFHFQTKPSSAAANAVQ 88

[Close]

BLAST of Csa4G056690 vs. TrEMBL
Match: V4SQQ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011398mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPS---------PKPNLPIS 87
           EMEQL++MGFPDELAA+ALAATGGKSTLKATEWIL+H+SS+ +         P PN   +
Sbjct: 2   EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHRSSTTTTGAACSFELPVPNPNQN 61

Query: 88  SNPNLQPKLDRFFHFQPRPPPPSASHVQ 107
            NP +QPKLDRFFHFQ +P   +A+ VQ
Sbjct: 62  QNP-VQPKLDRFFHFQTKPSSAAANAVQ 88

[Close]

BLAST of Csa4G056690 vs. TrEMBL
Match: A0A0D2R010_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G062600 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-19
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQPKL 87
           EMEQL++MGF  ELAAQALAATGGKSTLKATEWIL+HKSS+P+P  N P  S P  QPKL
Sbjct: 2   EMEQLLSMGFSSELAAQALAATGGKSTLKATEWILSHKSSNPNPNQN-PNPSPPPFQPKL 61

Query: 88  DRFFHF------QPRPPPPSAS 104
           DRFFH        P  P P+A+
Sbjct: 62  DRFFHLHTKLSTSPSSPEPTAT 82

[Close]

BLAST of Csa4G056690 vs. TAIR10
Match: AT1G24290.1 (AT1G24290.1 AAA-type ATPase family protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-13
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 29  MEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQPKLD 88
           MEQLV+MGF  +LAA+AL ATGG S  KAT+WIL+H+SS           S   LQPKLD
Sbjct: 1   MEQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSP---------QSTATLQPKLD 60

Query: 89  RFFHFQPRPPPPS 102
           RF    P+   P+
Sbjct: 61  RFLRLHPKALAPA 64

[Close]

BLAST of Csa4G056690 vs. NCBI nr
Match: gi|700198322|gb|KGN53480.1| (hypothetical protein Csa_4G056690 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW 60
           MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW
Sbjct: 1   MRNKASNNNNNKKKRKKNDLISISMGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEW 60

Query: 61  ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ 107
           ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ
Sbjct: 61  ILNHKSSSPSPKPNLPISSNPNLQPKLDRFFHFQPRPPPPSASHVQ 106

[Close]

BLAST of Csa4G056690 vs. NCBI nr
Match: gi|778691246|ref|XP_011653247.1| (PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 25  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 84
           MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ
Sbjct: 1   MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60

Query: 85  PKLDRFFHFQPRPPPPSASHVQ 107
           PKLDRFFHFQPRPPPPSASHVQ
Sbjct: 61  PKLDRFFHFQPRPPPPSASHVQ 82

[Close]

BLAST of Csa4G056690 vs. NCBI nr
Match: gi|659101966|ref|XP_008451883.1| (PREDICTED: ATPase WRNIP1 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-36
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 25  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 84
           MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNL ISSNPNLQ
Sbjct: 1   MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLTISSNPNLQ 60

Query: 85  PKLDRFFHFQPRPPPPSA 103
           PKLDRFFHF PRPPPPSA
Sbjct: 61  PKLDRFFHFHPRPPPPSA 78

[Close]

BLAST of Csa4G056690 vs. NCBI nr
Match: gi|590711336|ref|XP_007049077.1| (AAA-type ATPase family protein [Theobroma cacao])

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-20
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPN-LPISSNPNLQPK 87
           EM+QL++MGFP ELAAQALAATGGKSTLKATEWIL+HKSS+P+P PN  P  + P  QPK
Sbjct: 2   EMQQLLSMGFPSELAAQALAATGGKSTLKATEWILSHKSSNPNPNPNPNPNPTPPPFQPK 61

Query: 88  LDRFFHFQPRPP--PPS 102
           LDRFFH   + P  PPS
Sbjct: 62  LDRFFHLHTKLPNSPPS 78

[Close]

BLAST of Csa4G056690 vs. NCBI nr
Match: gi|641831135|gb|KDO50204.1| (hypothetical protein CISIN_1g008664mg [Citrus sinensis])

HSP 1 Score: 105.1 bits (261), Expect = 7.5e-20
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 28  EMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPS---------PKPNLPIS 87
           EMEQL++MGFPDELAA+ALAATGGKSTLKATEWIL+HKSS+ +         P PN   +
Sbjct: 2   EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPN 61

Query: 88  SNPNLQPKLDRFFHFQPRPPPPSASHVQ 107
            NP +QPKLDRFFHFQ +P   +A+ VQ
Sbjct: 62  QNP-VQPKLDRFFHFQTKPSSAAANAVQ 88

The following BLAST results are available for this feature:

BLAST of Csa4G056690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV66_CUCSA	2.5e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056690 PE=4 SV=1	[more]
A0A061DKG2_THECC	3.1e-20	70.13	AAA-type ATPase family protein OS=Theobroma cacao GN=TCM_002075 PE=4 SV=1	[more]
A0A067E4V2_CITSI	5.2e-20	63.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008664mg PE=4 SV=1	[more]
V4SQQ8_9ROSI	1.2e-19	62.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011398mg PE=4 SV=1	[more]
A0A0D2R010_GOSRA	4.4e-19	65.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G062600 PE=4 SV=1	[more]

BLAST of Csa4G056690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24290.1	2.5e-13	52.05	AAA-type ATPase family protein	[more]

BLAST of Csa4G056690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198322\|gb\|KGN53480.1\|	3.6e-54	100.00	hypothetical protein Csa_4G056690 [Cucumis sativus]	[more]
gi\|778691246\|ref\|XP_011653247.1\|	3.8e-40	100.00	PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1 [Cucumis sativus]	[more]
gi\|659101966\|ref\|XP_008451883.1\|	3.4e-36	97.44	PREDICTED: ATPase WRNIP1 [Cucumis melo]	[more]
gi\|590711336\|ref\|XP_007049077.1\|	4.4e-20	70.13	AAA-type ATPase family protein [Theobroma cacao]	[more]
gi\|641831135\|gb\|KDO50204.1\|	7.5e-20	63.64	hypothetical protein CISIN_1g008664mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009060	UBA-like_sf
IPR015940	UBA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU162826	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G056690.1	Csa4G056690.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162826	CU162826	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009060	UBA-like	unknown	SSF46934	UBA-like	coord: 27..77 score: 1.4
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 29..61 score: 6.
IPR015940	Ubiquitin-associated domain	PROFILE	PS50030	UBA	coord: 24..64 score: 11
None	No IPR available	GENE3D	G3DSA:1.10.8.10		coord: 27..66 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G056690	CSPI04G07020	Wild cucumber (PI 183967)	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G056690	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G056690	Cucurbita pepo (Zucchini)	cpecuB399
Csa4G056690	Bottle gourd (USVL1VR-Ls)	culsiB304
Csa4G056690	Cucumber (Gy14) v2	cgybcuB165
Csa4G056690	Melon (DHL92) v3.6.1	cumedB284
Csa4G056690	Silver-seed gourd	carcuB0047
Csa4G056690	Silver-seed gourd	carcuB0677
Csa4G056690	Watermelon (97103) v2	cuwmbB321
Csa4G056690	Wax gourd	cuwgoB365
Csa4G056690	Cucumber (Gy14) v1	cgycuB275
Csa4G056690	Cucurbita maxima (Rimu)	cmacuB337
Csa4G056690	Cucurbita maxima (Rimu)	cmacuB708
Csa4G056690	Cucurbita moschata (Rifu)	cmocuB325
Csa4G056690	Cucurbita moschata (Rifu)	cmocuB699
Csa4G056690	Melon (DHL92) v3.5.1	cumeB300
Csa4G056690	Watermelon (Charleston Gray)	cuwcgB324
Csa4G056690	Watermelon (97103) v1	cuwmB311