Csa4G050860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G050860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 4161432 .. 4161626 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

mRNA sequence

ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

Coding sequence (CDS)

ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

Protein sequence

MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPPNFSF*
Homology
[Close]
BLAST of Csa4G050860 vs. TrEMBL
Match: A0A0A0KV00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050860 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60
          MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP
Sbjct: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60

Query: 61 NFSF 65
          NFSF
Sbjct: 61 NFSF 64

[Close]
BLAST of Csa4G050860 vs. NCBI nr
Match: gi|700198225|gb|KGN53383.1| (hypothetical protein Csa_4G050860 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60
          MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP
Sbjct: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60

Query: 61 NFSF 65
          NFSF
Sbjct: 61 NFSF 64

The following BLAST results are available for this feature:
BLAST of Csa4G050860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV00_CUCSA2.0e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050860 PE=4 SV=1[more]
BLAST of Csa4G050860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198225|gb|KGN53383.1|2.9e-30100.00hypothetical protein Csa_4G050860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G050860.1Csa4G050860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G050860Bottle gourd (USVL1VR-Ls)culsiB245
Csa4G050860Bottle gourd (USVL1VR-Ls)culsiB298
Csa4G050860Bottle gourd (USVL1VR-Ls)culsiB304
Csa4G050860Cucumber (Gy14) v2cgybcuB124
Csa4G050860Cucumber (Gy14) v2cgybcuB165
Csa4G050860Cucumber (Gy14) v2cgybcuB222
Csa4G050860Melon (DHL92) v3.6.1cumedB257
Csa4G050860Melon (DHL92) v3.6.1cumedB258
Csa4G050860Melon (DHL92) v3.6.1cumedB281
Csa4G050860Melon (DHL92) v3.6.1cumedB297
Csa4G050860Silver-seed gourdcarcuB0044
Csa4G050860Silver-seed gourdcarcuB0617
Csa4G050860Watermelon (97103) v2cuwmbB269
Csa4G050860Watermelon (97103) v2cuwmbB311
Csa4G050860Watermelon (97103) v2cuwmbB318
Csa4G050860Wax gourdcuwgoB363
Csa4G050860Wax gourdcuwgoB365
Csa4G050860Cucumber (Chinese Long) v2cucuB093
Csa4G050860Cucumber (Chinese Long) v2cucuB141
Csa4G050860Cucumber (Chinese Long) v2cucuB142
Csa4G050860Cucumber (Gy14) v1cgycuB129
Csa4G050860Cucumber (Gy14) v1cgycuB367
Csa4G050860Cucumber (Gy14) v1cgycuB433
Csa4G050860Cucurbita maxima (Rimu)cmacuB337
Csa4G050860Cucurbita maxima (Rimu)cmacuB713
Csa4G050860Cucurbita moschata (Rifu)cmocuB277
Csa4G050860Cucurbita moschata (Rifu)cmocuB325
Csa4G050860Cucurbita moschata (Rifu)cmocuB705
Csa4G050860Melon (DHL92) v3.5.1cumeB297
Csa4G050860Melon (DHL92) v3.5.1cumeB276
Csa4G050860Melon (DHL92) v3.5.1cumeB312
Csa4G050860Watermelon (Charleston Gray)cuwcgB289
Csa4G050860Watermelon (Charleston Gray)cuwcgB291
Csa4G050860Watermelon (Charleston Gray)cuwcgB316
Csa4G050860Watermelon (Charleston Gray)cuwcgB321
Csa4G050860Watermelon (97103) v1cuwmB325
Csa4G050860Watermelon (97103) v1cuwmB315
Csa4G050860Watermelon (97103) v1cuwmB330
Csa4G050860Cucurbita pepo (Zucchini)cpecuB221
Csa4G050860Cucurbita pepo (Zucchini)cpecuB406