Csa4G045050 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACATTACCAAAACCAATACAGCGCACAAGCTGGAAGCGATGAATACGGCTATCCAATTCGCCAGACCGATGAATACAGCAACGTTATCTCCGAAACCGGTCAGTATGTCGATACCCTCCGCCGGACCGATGACCAGTACCCCAAGCCGATTCATGGAAGCGAGCAGCAGCAGCCGAGTGGAATATTTCATAATGAAAAAGTGGTGATGACGAAGACGAGAGAGGATGGGAGTGGACATCATGAGAAGAAGGGGGTAATAGAGAAGATTAAGGAGAAGCTGCCGGGAGGACACCATTGA ATGGCACATTACCAAAACCAATACAGCGCACAAGCTGGAAGCGATGAATACGGCTATCCAATTCGCCAGACCGATGAATACAGCAACGTTATCTCCGAAACCGGTCAGTATGTCGATACCCTCCGCCGGACCGATGACCAGTACCCCAAGCCGATTCATGGAAGCGAGCAGCAGCAGCCGAGTGGAATATTTCATAATGAAAAAGTGGTGATGACGAAGACGAGAGAGGATGGGAGTGGACATCATGAGAAGAAGGGGGTAATAGAGAAGATTAAGGAGAAGCTGCCGGGAGGACACCATTGA ATGGCACATTACCAAAACCAATACAGCGCACAAGCTGGAAGCGATGAATACGGCTATCCAATTCGCCAGACCGATGAATACAGCAACGTTATCTCCGAAACCGGTCAGTATGTCGATACCCTCCGCCGGACCGATGACCAGTACCCCAAGCCGATTCATGGAAGCGAGCAGCAGCAGCCGAGTGGAATATTTCATAATGAAAAAGTGGTGATGACGAAGACGAGAGAGGATGGGAGTGGACATCATGAGAAGAAGGGGGTAATAGAGAAGATTAAGGAGAAGCTGCCGGGAGGACACCATTGA MAHYQNQYSAQAGSDEYGYPIRQTDEYSNVISETGQYVDTLRRTDDQYPKPIHGSEQQQPSGIFHNEKVVMTKTREDGSGHHEKKGVIEKIKEKLPGGHH*
BLAST of Csa4G045050 vs. Swiss-Prot
Match: DHN1_PEA (Dehydrin DHN1 OS=Pisum sativum GN=DHN1 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06 Identity = 46/137 (33.58%), Postives = 55/137 (40.15%), Query Frame = 1
HSP 2 Score: 33.1 bits (74), Expect = 2.1e+00 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1
BLAST of Csa4G045050 vs. TrEMBL
Match: A0A0A0KUH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045050 PE=3 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 1.3e-52 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Csa4G045050 vs. TrEMBL
Match: A0A0A0KWM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045040 PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12 Identity = 53/141 (37.59%), Postives = 65/141 (46.10%), Query Frame = 1
BLAST of Csa4G045050 vs. TrEMBL
Match: A0A0A0KWM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045040 PE=3 SV=1) HSP 1 Score: 42.7 bits (99), Expect = 3.0e-01 Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 1
HSP 2 Score: 78.2 bits (191), Expect = 6.5e-12 Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 1
BLAST of Csa4G045050 vs. TrEMBL
Match: K4BAZ9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.6e-05 Identity = 47/157 (29.94%), Postives = 63/157 (40.13%), Query Frame = 1
HSP 2 Score: 77.8 bits (190), Expect = 8.4e-12 Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 1
BLAST of Csa4G045050 vs. TrEMBL
Match: M0ZVK5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003531 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 4.5e-05 Identity = 47/157 (29.94%), Postives = 62/157 (39.49%), Query Frame = 1
HSP 2 Score: 76.3 bits (186), Expect = 2.5e-11 Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 1
BLAST of Csa4G045050 vs. TAIR10
Match: AT3G50980.1 (AT3G50980.1 dehydrin xero 1) HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06 Identity = 40/128 (31.25%), Postives = 51/128 (39.84%), Query Frame = 1
BLAST of Csa4G045050 vs. NCBI nr
Match: gi|778697508|ref|XP_011654339.1| (PREDICTED: late embryogenesis abundant protein D-11-like [Cucumis sativus]) HSP 1 Score: 213.4 bits (542), Expect = 1.8e-52 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1
BLAST of Csa4G045050 vs. NCBI nr
Match: gi|659102400|ref|XP_008452109.1| (PREDICTED: dehydrin DHN1 [Cucumis melo]) HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14 Identity = 55/142 (38.73%), Postives = 67/142 (47.18%), Query Frame = 1
BLAST of Csa4G045050 vs. NCBI nr
Match: gi|659102400|ref|XP_008452109.1| (PREDICTED: dehydrin DHN1 [Cucumis melo]) HSP 1 Score: 44.3 bits (103), Expect = 1.5e-01 Identity = 49/182 (26.92%), Postives = 64/182 (35.16%), Query Frame = 1
HSP 2 Score: 79.7 bits (195), Expect = 3.2e-12 Identity = 53/141 (37.59%), Postives = 65/141 (46.10%), Query Frame = 1
BLAST of Csa4G045050 vs. NCBI nr
Match: gi|778690692|ref|XP_011653150.1| (PREDICTED: dehydrin DHN1-like [Cucumis sativus]) HSP 1 Score: 42.7 bits (99), Expect = 4.3e-01 Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 1
HSP 2 Score: 77.8 bits (190), Expect = 1.2e-11 Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 1
BLAST of Csa4G045050 vs. NCBI nr
Match: gi|970008589|ref|XP_015065160.1| (PREDICTED: late embryogenesis abundant protein-like [Solanum pennellii]) HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05 Identity = 47/157 (29.94%), Postives = 63/157 (40.13%), Query Frame = 1
HSP 2 Score: 77.8 bits (190), Expect = 1.2e-11 Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |