Csa4G022220 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G022220
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 2365445 .. 2366142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACAGGGTTTCGATGATTTTGTATGTGCTGTTCTTCATTATTATGCTTTCAATTTCATCTAATAATAATTATAATGCTTCTGCAAGAAAATTTCTTGACGTTAATTTCCCTCTTCTTGACGATGCCTTCGACCTTCAAATGGGTGCATCTTCATTATTTTGTAAGTCGTCTCTCACCTTCTTTCTGCTTCTTTCACTTCTTTTCAAAAACTAAGTTTATAAATGAGAAATTTTTAAATATAGCATAGTAAAATTTAGATTCTATTCATGATGATAGACATTAGAATCGAAAAGTTTGACCATGTTTTTTTTTTTTTTGTATATTTCAATAATTTTTCTTTTCAATACTTGGTTTTGCTTAATATTATTACTTTTTTATCTTCTAATTCTTACAAATGCTTTCAAAATAATCCAGACCAAGTTTTGCCTAATAGTTCGAGTAAAATAAAGAAAAAGAAGCATAATTATTTAAAGAAAACACGAAACTAAAAAATGAAATCATGAACAGACGAGATGTTAATATAGATTGTTTATGATTTTATTATTATTTGTAATCATTGAATGTATAATTTGATTTACTTTTATGGTTTTGTTTTTCAGATAAATTGGAAGGAGAGCTACAAAAGAGATTCGAGGATTTATTAAAAACAACCACGGATAATGATATTCCTCGTGGTGGAAACTATTAAA

mRNA sequence

ATGGCTTCCAACAGGGTTTCGATGATTTTGTATGTGCTGTTCTTCATTATTATGCTTTCAATTTCATCTAATAATAATTATAATGCTTCTGCAAGAAAATTTCTTGACGTTAATTTCCCTCTTCTTGACGATGCCTTCGACCTTCAAATGGGTGCATCTTCATTATTTTATAAATTGGAAGGAGAGCTACAAAAGAGATTCGAGGATTTATTAAAAACAACCACGGATAATGATATTCCTCGTGGTGGAAACTATTAA

Coding sequence (CDS)

ATGGCTTCCAACAGGGTTTCGATGATTTTGTATGTGCTGTTCTTCATTATTATGCTTTCAATTTCATCTAATAATAATTATAATGCTTCTGCAAGAAAATTTCTTGACGTTAATTTCCCTCTTCTTGACGATGCCTTCGACCTTCAAATGGGTGCATCTTCATTATTTTATAAATTGGAAGGAGAGCTACAAAAGAGATTCGAGGATTTATTAAAAACAACCACGGATAATGATATTCCTCGTGGTGGAAACTATTAA

Protein sequence

MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLEGELQKRFEDLLKTTTDNDIPRGGNY*

Homology

[Close]

BLAST of Csa4G022220 vs. TrEMBL
Match: A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60
          MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELQKRFEDLLKTTTDNDIPRGGNY 86
          GELQKRFEDLLKTTTDNDIPRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of Csa4G022220 vs. TrEMBL
Match: A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1


Query: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60
          MAS RVSMIL V+FFIIML ISSNNNYN SARKFLDVN PL DDAF+LQM ASSLFYK++
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPL-DDAFNLQMDASSLFYKMK 60

Query: 61 GELQKRFEDLLKTTTDNDIPRGGNY 86
          GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61 GELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of Csa4G022220 vs. NCBI nr
Match: gi|700197977|gb|KGN53135.1| (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60
          MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELQKRFEDLLKTTTDNDIPRGGNY 86
          GELQKRFEDLLKTTTDNDIPRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of Csa4G022220 vs. NCBI nr
Match: gi|700197976|gb|KGN53134.1| (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1


Query: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60
          MAS RVSMIL V+FFIIML ISSNNNYN SARKFLDVN PL DDAF+LQM ASSLFYK++
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPL-DDAFNLQMDASSLFYKMK 60

Query: 61 GELQKRFEDLLKTTTDNDIPRGGNY 86
          GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61 GELQRRFEDLLKATTDNDIPRGGNY 84

The following BLAST results are available for this feature:

BLAST of Csa4G022220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU24_CUCSA	1.1e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1	[more]
A0A0A0KW84_CUCSA	1.2e-30	84.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1	[more]

BLAST of Csa4G022220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197977\|gb\|KGN53135.1\|	1.5e-39	100.00	hypothetical protein Csa_4G022220 [Cucumis sativus]	[more]
gi\|700197976\|gb\|KGN53134.1\|	1.7e-30	84.71	hypothetical protein Csa_4G022210 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G022220.1	Csa4G022220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G022220	Watermelon (97103) v2	cuwmbB316
Csa4G022220	Wax gourd	cuwgoB368
Csa4G022220	Cucumber (Gy14) v1	cgycuB102
Csa4G022220	Cucurbita maxima (Rimu)	cmacuB332
Csa4G022220	Cucurbita maxima (Rimu)	cmacuB710
Csa4G022220	Cucurbita moschata (Rifu)	cmocuB321
Csa4G022220	Cucurbita moschata (Rifu)	cmocuB700
Csa4G022220	Melon (DHL92) v3.5.1	cumeB312
Csa4G022220	Watermelon (Charleston Gray)	cuwcgB319
Csa4G022220	Watermelon (97103) v1	cuwmB312
Csa4G022220	Cucurbita pepo (Zucchini)	cpecuB401
Csa4G022220	Bottle gourd (USVL1VR-Ls)	culsiB303
Csa4G022220	Cucumber (Gy14) v2	cgybcuB165
Csa4G022220	Melon (DHL92) v3.6.1	cumedB297