Csa4G015120 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G015120
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 1987706 .. 1988094 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGATGAAACTACCGACCAAAATCCGGCCATTTCTTCCTTTCTCGACTTTCAACCTTCACAATCACACGTGCTATCTCCAACCCCAATCGCTCTTTTACCGAAAGTACGCTTGCCTTTCCCTTTCAATTACGTCACTGCCACCATCTCAACTGAGTCAAAAGTGACTCAAATCGTCTGGGTAAATTCGAAAATAGCGAGAACTTGAAGGGGCAGTATGGAAAAACTTTGGTGTTTGGAGTGCAGGTCTGAATCGAAGCTTCTCTGTTCAGCTGTGAAAATTTCTTTCTTGGCGTTGTATTCTCTTTTTGACTTTGATTCTAAACCGAACCCATATCTCTTTTCTTGTGAAATTCTTGAGTTTCCTCATGCCTATTCATATCTCTGA

mRNA sequence

ATGCCGATGAAACTACCGACCAAAATCCGGCCATTTCTTCCTTTCTCGACTTTCAACCTTCACAATCACACGTGCTATCTCCAACCCCAATCGCTCTTTTACCGAAAGTACGCTTGCCTTTCCCTTTCAATTACGTCACTGCCACCATCTCAACTGAGTCAAAAGTCTGAATCGAAGCTTCTCTGTTCAGCTGTGAAAATTTCTTTCTTGGCGTTGTATTCTCTTTTTGACTTTGATTCTAAACCGAACCCATATCTCTTTTCTTGTGAAATTCTTGAGTTTCCTCATGCCTATTCATATCTCTGA

Coding sequence (CDS)

ATGCCGATGAAACTACCGACCAAAATCCGGCCATTTCTTCCTTTCTCGACTTTCAACCTTCACAATCACACGTGCTATCTCCAACCCCAATCGCTCTTTTACCGAAAGTACGCTTGCCTTTCCCTTTCAATTACGTCACTGCCACCATCTCAACTGAGTCAAAAGTCTGAATCGAAGCTTCTCTGTTCAGCTGTGAAAATTTCTTTCTTGGCGTTGTATTCTCTTTTTGACTTTGATTCTAAACCGAACCCATATCTCTTTTCTTGTGAAATTCTTGAGTTTCCTCATGCCTATTCATATCTCTGA

Protein sequence

MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKLLCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL*
Homology
[Close]
BLAST of Csa4G015120 vs. TrEMBL
Match: A0A0A0KYZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015120 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 4.9e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL 60
           MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL
Sbjct: 1   MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL 60

Query: 61  LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL 102
           LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL
Sbjct: 61  LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL 101

[Close]
BLAST of Csa4G015120 vs. NCBI nr
Match: gi|700197913|gb|KGN53071.1| (hypothetical protein Csa_4G015120 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.1e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL 60
           MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL
Sbjct: 1   MPMKLPTKIRPFLPFSTFNLHNHTCYLQPQSLFYRKYACLSLSITSLPPSQLSQKSESKL 60

Query: 61  LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL 102
           LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL
Sbjct: 61  LCSAVKISFLALYSLFDFDSKPNPYLFSCEILEFPHAYSYL 101

The following BLAST results are available for this feature:
BLAST of Csa4G015120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYZ7_CUCSA4.9e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015120 PE=4 SV=1[more]
BLAST of Csa4G015120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197913|gb|KGN53071.1|7.1e-52100.00hypothetical protein Csa_4G015120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097163cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G015120.1Csa4G015120.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097163CU097163transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G015120Watermelon (97103) v2cuwmbB317
Csa4G015120Cucumber (Gy14) v1cgycuB102
Csa4G015120Cucurbita maxima (Rimu)cmacuB260
Csa4G015120Cucurbita maxima (Rimu)cmacuB835
Csa4G015120Cucurbita moschata (Rifu)cmocuB245
Csa4G015120Cucurbita moschata (Rifu)cmocuB823
Csa4G015120Melon (DHL92) v3.5.1cumeB312
Csa4G015120Melon (DHL92) v3.5.1cumeB320
Csa4G015120Watermelon (Charleston Gray)cuwcgB320
Csa4G015120Watermelon (97103) v1cuwmB313
Csa4G015120Cucurbita pepo (Zucchini)cpecuB615
Csa4G015120Cucurbita pepo (Zucchini)cpecuB869
Csa4G015120Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G015120Bottle gourd (USVL1VR-Ls)culsiB311
Csa4G015120Cucumber (Gy14) v2cgybcuB165
Csa4G015120Cucumber (Gy14) v2cgybcuB172
Csa4G015120Melon (DHL92) v3.6.1cumedB297
Csa4G015120Melon (DHL92) v3.6.1cumedB309
Csa4G015120Silver-seed gourdcarcuB0425
Csa4G015120Silver-seed gourdcarcuB0716