Csa4G011860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G011860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 1823288 .. 1823661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTATATTCTGTGTTCATTGGTGAACCATTGTCTAATCTACCATGGATATCTCCAATCTTCCCTTGGGTTGCTGATATGACAGAATGGACGGTTGATTTGGTTGACTAAACAAAATTGGATGTTTTAAATGTGAACTTAGTCTGTGCTTTTAATTTTGGTTTTTATACTTTTAAAAGGTTGGTTTGTGGGATACTTAGTACTTTTCATCTTCTATTTCAATATTGATTCAATGTGTTTTAGAGACGGACCGTGTTGGTCAGAGAGAGATCTATGGGTTCGATTTTTCTTTTGAAAAAACTGGTTACGGCTGGATTCAAGGAAAACTGATCGATATTCTTCAATTTGGTCGGTTTTGGTTGTTGACTTAG

mRNA sequence

ATGACATTATATTCTGTGTTCATTGGTGAACCATTGTCTAATCTACCATGGATATCTCCAATCTTCCCTTGGGTTGCTGATATGACAGAATGGACGGTTGATTTGTACTTTTCATCTTCTATTTCAATATTGATTCAATGTGTTTTAGAGACGGACCGTGTTGGTCAGAGAGAGATCTATGGGTTCGATTTTTCTTTTGAAAAAACTGGTTACGGCTGGATTCAAGGAAAACTGATCGATATTCTTCAATTTGGTCGGTTTTGGTTGTTGACTTAG

Coding sequence (CDS)

ATGACATTATATTCTGTGTTCATTGGTGAACCATTGTCTAATCTACCATGGATATCTCCAATCTTCCCTTGGGTTGCTGATATGACAGAATGGACGGTTGATTTGTACTTTTCATCTTCTATTTCAATATTGATTCAATGTGTTTTAGAGACGGACCGTGTTGGTCAGAGAGAGATCTATGGGTTCGATTTTTCTTTTGAAAAAACTGGTTACGGCTGGATTCAAGGAAAACTGATCGATATTCTTCAATTTGGTCGGTTTTGGTTGTTGACTTAG

Protein sequence

MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIYGFDFSFEKTGYGWIQGKLIDILQFGRFWLLT*
Homology
[Close]
BLAST of Csa4G011860 vs. TrEMBL
Match: A0A0A0KW17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011860 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY 60
          MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY
Sbjct: 1  MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY 60

Query: 61 GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT 92
          GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT
Sbjct: 61 GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT 91

[Close]
BLAST of Csa4G011860 vs. NCBI nr
Match: gi|700197881|gb|KGN53039.1| (hypothetical protein Csa_4G011860 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY 60
          MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY
Sbjct: 1  MTLYSVFIGEPLSNLPWISPIFPWVADMTEWTVDLYFSSSISILIQCVLETDRVGQREIY 60

Query: 61 GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT 92
          GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT
Sbjct: 61 GFDFSFEKTGYGWIQGKLIDILQFGRFWLLT 91

The following BLAST results are available for this feature:
BLAST of Csa4G011860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW17_CUCSA7.4e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011860 PE=4 SV=1[more]
BLAST of Csa4G011860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197881|gb|KGN53039.1|1.1e-46100.00hypothetical protein Csa_4G011860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085048cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G011860.1Csa4G011860.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU085048CU085048transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G011860Silver-seed gourdcarcuB0128
Csa4G011860Silver-seed gourdcarcuB0716
Csa4G011860Watermelon (97103) v2cuwmbB317
Csa4G011860Wax gourdcuwgoB381
Csa4G011860Cucumber (Gy14) v1cgycuB102
Csa4G011860Cucurbita maxima (Rimu)cmacuB260
Csa4G011860Cucurbita maxima (Rimu)cmacuB835
Csa4G011860Cucurbita moschata (Rifu)cmocuB245
Csa4G011860Cucurbita moschata (Rifu)cmocuB823
Csa4G011860Melon (DHL92) v3.5.1cumeB312
Csa4G011860Melon (DHL92) v3.5.1cumeB320
Csa4G011860Watermelon (Charleston Gray)cuwcgB320
Csa4G011860Watermelon (97103) v1cuwmB313
Csa4G011860Cucurbita pepo (Zucchini)cpecuB615
Csa4G011860Cucurbita pepo (Zucchini)cpecuB869
Csa4G011860Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G011860Cucumber (Gy14) v2cgybcuB165
Csa4G011860Cucumber (Gy14) v2cgybcuB172
Csa4G011860Melon (DHL92) v3.6.1cumedB297