Csa4G000780 (gene) Cucumber (Chinese Long) v2

NameCsa4G000780
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 167014 .. 167267 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGGTTAACCAAGCTGGTTTAGAGATGATATATATATTTGCCCCAAGAAAATTGAAGTTGAAAAATGGAGGACATAGGGCCATGCATGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTTATACACTACTAG

mRNA sequence

ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGATTGTCCTTCTGGGTGCTATTGCAAACCTTATACACTACTAG

Coding sequence (CDS)

ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGATTGTCCTTCTGGGTGCTATTGCAAACCTTATACACTACTAG

Protein sequence

MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY*
BLAST of Csa4G000780 vs. TrEMBL
Match: A0A0A0KWD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000780 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY 53
          MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY
Sbjct: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY 52

BLAST of Csa4G000780 vs. NCBI nr
Match: gi|700197599|gb|KGN52757.1| (hypothetical protein Csa_4G000780 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY 53
          MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY
Sbjct: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEIVLLGAIANLIHY 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KWD8_CUCSA1.3e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700197599|gb|KGN52757.1|1.8e-19100.00hypothetical protein Csa_4G000780 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU114084cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G000780.1Csa4G000780.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114084CU114084transcribed_cluster


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G000780CSPI04G00270Wild cucumber (PI 183967)cpicuB182
The following gene(s) are paralogous to this gene:

None