Csa3G914580 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G914580
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Chymotrypsin inhibitor-2; contains IPR000864 (Proteinase inhibitor I13, potato inhibitor I)
Location	Chr3 : 39694732 .. 39695404 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTATCCAATTAACTACAAAACACATCATCCCACGCTATAAACTTTGTGAAGTATAACAAATAGAAAGACAACAATTTCATCATCATGTCCTTCCCATTCAATCGTAAGTATATCTTTTGATGTTCAATTTTTATTCACTTAATCTCTCTTTTCCATCTTCTAACTTTATTATATATATATATATATACTCTTTAATCTTCCCTAATTAACAAGCATATATACTTTTTCCCTATATCTTTCAAAACAGTAAAATCATGGCCAGCACTAAAGTTCTTGGATGCACAAACTGTGGCAAATGCTATCAAGACAGAGAATCCTAACTTTGAAATAGTCACAGTGCCCGAAGGAACTCCAGTAACAAAGGATATTATACCTGGTCGAGTTCGACTCGTTGTTGATGCAAATGGAAAAGTGGTGAATGTTCCTCAAGAGGGTTGAAATGTAAACCTACATGTTTCAAATAATAAATAAAAGTAATAAACTACTTTTACTACTCTACATACCTAAATAATTTGAGCATTTCCCTTTCTTTTTTAATTCAGTATAGCAATGGAATGGAGGTAATAAAAATTTGAACCTCTCAAACTCAACTGAGGTTACATATATCAGTTCATTTCCAAAATGTATCTATCAACAATATCTATGATCGAATTTGAACCTTTTAAACCGC

mRNA sequence

ATGTCCTTCCCATTCAATCTAAAATCATGGCCAGCACTAAAGTTCTTGGATGCACAAACTGTGGCAAATGCTATCAAGACAGAGAATCCTAACTTTGAAATAGTCACAGTGCCCGAAGGAACTCCAGTAACAAAGGATATTATACCTGGTCGAGTTCGACTCGTTGTTGATGCAAATGGAAAAGTGGTGAATGTTCCTCAAGAGGGTTGA

Coding sequence (CDS)

ATGTCCTTCCCATTCAATCTAAAATCATGGCCAGCACTAAAGTTCTTGGATGCACAAACTGTGGCAAATGCTATCAAGACAGAGAATCCTAACTTTGAAATAGTCACAGTGCCCGAAGGAACTCCAGTAACAAAGGATATTATACCTGGTCGAGTTCGACTCGTTGTTGATGCAAATGGAAAAGTGGTGAATGTTCCTCAAGAGGGTTGA

Protein sequence

MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVPQEG*

Homology

[Close]

BLAST of Csa3G914580 vs. Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06
Identity = 26/61 (42.62%), Postives = 32/61 (52.46%), Query Frame = 1


Query: 9  SWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVPQE 68
          SWP L   +    A  I+TEN N + + V EG P+T+D+   RVR+ VD N  V  VP  
Sbjct: 10 SWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAI 69

Query: 69 G 70
          G
Sbjct: 70 G 70

[Close]

BLAST of Csa3G914580 vs. TrEMBL
Match: A0A0A0LFD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G914580 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG 60
          MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG
Sbjct: 1  MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG 60

Query: 61 KVVNVPQEG 70
          KVVNVPQEG
Sbjct: 61 KVVNVPQEG 69

[Close]

BLAST of Csa3G914580 vs. TrEMBL
Match: A0A0A0LIF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G914570 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-12
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 7  LKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVP 66
          LKSWPAL F+DA+TVAN IK ENP+F+I  +  G+PVTKD+  GRVRL  +    VV VP
Sbjct: 9  LKSWPALNFMDARTVANIIKKENPDFQIFILLAGSPVTKDLKHGRVRLFTNMEEIVVIVP 68

Query: 67 QEG 70
          QEG
Sbjct: 69 QEG 71

[Close]

BLAST of Csa3G914580 vs. TrEMBL
Match: V4VRJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022906mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.2e-06
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 9   SWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVPQE 68
           SWP L  ++ +  A  I+ ENPN   + + EGTPVT+D    RVR+VVD   KVV VP+ 
Sbjct: 59  SWPELVGVNGEIAAATIQKENPNVHAIIILEGTPVTQDFRCDRVRVVVDKYEKVVQVPRI 118

Query: 69  G 70
           G
Sbjct: 119 G 119

[Close]

BLAST of Csa3G914580 vs. TAIR10
Match: AT2G38870.1 (AT2G38870.1 Serine protease inhibitor, potato inhibitor I-type family protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-06
Identity = 24/61 (39.34%), Postives = 29/61 (47.54%), Query Frame = 1


Query: 9  SWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVPQE 68
          SWP L   +    A  I+ ENP      + +G+PVT D    RVR+ VD N  VV  P+ 
Sbjct: 10 SWPELTGTNGDYAAVVIERENPTVNAAVILDGSPVTADFRCDRVRVFVDGNRIVVKTPKS 69

Query: 69 G 70
          G
Sbjct: 70 G 70

[Close]

BLAST of Csa3G914580 vs. NCBI nr
Match: gi|700205345|gb|KGN60478.1| (hypothetical protein Csa_3G914580 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG 60
          MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG
Sbjct: 1  MSFPFNLKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANG 60

Query: 61 KVVNVPQEG 70
          KVVNVPQEG
Sbjct: 61 KVVNVPQEG 69

[Close]

BLAST of Csa3G914580 vs. NCBI nr
Match: gi|700205344|gb|KGN60477.1| (hypothetical protein Csa_3G914570 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 6.4e-12
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 7  LKSWPALKFLDAQTVANAIKTENPNFEIVTVPEGTPVTKDIIPGRVRLVVDANGKVVNVP 66
          LKSWPAL F+DA+TVAN IK ENP+F+I  +  G+PVTKD+  GRVRL  +    VV VP
Sbjct: 9  LKSWPALNFMDARTVANIIKKENPDFQIFILLAGSPVTKDLKHGRVRLFTNMEEIVVIVP 68

Query: 67 QEG 70
          QEG
Sbjct: 69 QEG 71

The following BLAST results are available for this feature:

BLAST of Csa3G914580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HPI_HEVBR	4.0e-06	42.62	Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2	[more]

BLAST of Csa3G914580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFD4_CUCSA	2.5e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G914580 PE=4 SV=1	[more]
A0A0A0LIF6_CUCSA	4.5e-12	61.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G914570 PE=4 SV=1	[more]
V4VRJ6_9ROSI	8.2e-06	47.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022906mg PE=4 SV=1	[more]

BLAST of Csa3G914580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G38870.1	5.6e-06	39.34	Serine protease inhibitor, potato inhibitor I-type family protein	[more]

BLAST of Csa3G914580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205345\|gb\|KGN60478.1\|	3.6e-31	100.00	hypothetical protein Csa_3G914580 [Cucumis sativus]	[more]
gi\|700205344\|gb\|KGN60477.1\|	6.4e-12	61.90	hypothetical protein Csa_3G914570 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000864	Prot_inh_pot1

Vocabulary: **Molecular Function**
Term	Definition
GO:0004867	serine-type endopeptidase inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009611	response to wounding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU107162	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G914580.1	Csa3G914580.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107162	CU107162	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PRODOM	PD002604		coord: 9..69 score: 6.
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PFAM	PF00280	potato_inhibit	coord: 9..68 score: 1.2
IPR000864	Proteinase inhibitor I13, potato inhibitor I	unknown	SSF54654	CI-2 family of serine protease inhibitors	coord: 6..68 score: 2.88
None	No IPR available	GENE3D	G3DSA:3.30.10.10		coord: 8..69 score: 2.3
None	No IPR available	PANTHER	PTHR33091	FAMILY NOT NAMED	coord: 9..69 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G914580	Cucurbita pepo (Zucchini)	cpecuB240
Csa3G914580	Cucurbita pepo (Zucchini)	cpecuB246
Csa3G914580	Cucurbita pepo (Zucchini)	cpecuB721
Csa3G914580	Bottle gourd (USVL1VR-Ls)	culsiB213
Csa3G914580	Bottle gourd (USVL1VR-Ls)	culsiB221
Csa3G914580	Cucumber (Gy14) v2	cgybcuB110
Csa3G914580	Melon (DHL92) v3.6.1	cumedB208
Csa3G914580	Silver-seed gourd	carcuB0241
Csa3G914580	Watermelon (97103) v2	cuwmbB252
Csa3G914580	Wax gourd	cuwgoB302
Csa3G914580	Cucumber (Gy14) v1	cgycuB450
Csa3G914580	Cucurbita maxima (Rimu)	cmacuB511
Csa3G914580	Cucurbita maxima (Rimu)	cmacuB604
Csa3G914580	Cucurbita moschata (Rifu)	cmocuB502
Csa3G914580	Cucurbita moschata (Rifu)	cmocuB594
Csa3G914580	Melon (DHL92) v3.5.1	cumeB222
Csa3G914580	Watermelon (Charleston Gray)	cuwcgB175
Csa3G914580	Watermelon (97103) v1	cuwmB180
Csa3G914580	Watermelon (97103) v1	cuwmB190