Csa3G880040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G880040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 37102916 .. 37103182 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTTATCTCCAGCTACTTGAGCTCCCTTTCCATGCTGACCTTCAAGCCACACTCATCATTCTCGAGCGATGGGGAAGACGAGGACAAGGATCGTAGTTCTGCAGCCTCCTTGATGACATCGCATATTTTTTATCTTCTTTATTTGGTTGATATCTTGTATTCGACCTCTTCATTCTCCATCATTCTATTTGTTCGGTCGGTGTCTGTATTGTTGTATTTGTGTATTTTTCCCCTCGCTCTCAAGGAAAGTATTGCTTTGTAA

mRNA sequence

ATGCCTTTTATCTCCAGCTACTTGAGCTCCCTTTCCATGCTGACCTTCAAGCCACACTCATCATTCTCGAGCGATGGGGAAGACGAGGACAAGGATCGTAGTTCTGCAGCCTCCTTGATGACATCGCATATTTTTTATCTTCTTTATTTGGTTGATATCTTGTATTCGACCTCTTCATTCTCCATCATTCTATTTGTTCGGTCGGTGTCTGTATTGTTGTATTTGTGTATTTTTCCCCTCGCTCTCAAGGAAAGTATTGCTTTGTAA

Coding sequence (CDS)

ATGCCTTTTATCTCCAGCTACTTGAGCTCCCTTTCCATGCTGACCTTCAAGCCACACTCATCATTCTCGAGCGATGGGGAAGACGAGGACAAGGATCGTAGTTCTGCAGCCTCCTTGATGACATCGCATATTTTTTATCTTCTTTATTTGGTTGATATCTTGTATTCGACCTCTTCATTCTCCATCATTCTATTTGTTCGGTCGGTGTCTGTATTGTTGTATTTGTGTATTTTTCCCCTCGCTCTCAAGGAAAGTATTGCTTTGTAA

Protein sequence

MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSFSIILFVRSVSVLLYLCIFPLALKESIAL*
Homology
[Close]
BLAST of Csa3G880040 vs. TrEMBL
Match: A0A0A0LEF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G880040 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF 60
          MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF
Sbjct: 1  MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF 60

Query: 61 SIILFVRSVSVLLYLCIFPLALKESIAL 89
          SIILFVRSVSVLLYLCIFPLALKESIAL
Sbjct: 61 SIILFVRSVSVLLYLCIFPLALKESIAL 88

[Close]
BLAST of Csa3G880040 vs. NCBI nr
Match: gi|700205005|gb|KGN60138.1| (hypothetical protein Csa_3G880040 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF 60
          MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF
Sbjct: 1  MPFISSYLSSLSMLTFKPHSSFSSDGEDEDKDRSSAASLMTSHIFYLLYLVDILYSTSSF 60

Query: 61 SIILFVRSVSVLLYLCIFPLALKESIAL 89
          SIILFVRSVSVLLYLCIFPLALKESIAL
Sbjct: 61 SIILFVRSVSVLLYLCIFPLALKESIAL 88

The following BLAST results are available for this feature:
BLAST of Csa3G880040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEF1_CUCSA1.4e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G880040 PE=4 SV=1[more]
BLAST of Csa3G880040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205005|gb|KGN60138.1|2.1e-39100.00hypothetical protein Csa_3G880040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102834cucumber EST collection version 3.0transcribed_cluster
CU110645cucumber EST collection version 3.0transcribed_cluster
CU147468cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G880040.1Csa3G880040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU110645CU110645transcribed_cluster
CU102834CU102834transcribed_cluster
CU147468CU147468transcribed_cluster