Csa3G876560 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G876560
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 36739804 .. 36740016 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTGATCTTACAAAATCGACGGAGAGGAACCGGCGTGGTACGGAATTCACCGGAAATTCGAAGTCCGATTGATCTACCGAGCTTGGCCCGCTTGAGAAGAAGAACAACTCACGGTGGAGCTCACAGAGGTCTGGGGAAATGGGGATTCTTTCAACTCACTGAGCTGACACGTGGTCTACTATTACATTGTCATCCTATTTATTTTTAG

mRNA sequence

ATGACGGTGATCTTACAAAATCGACGGAGAGGAACCGGCGTGGTACGGAATTCACCGGAAATTCGAAGTCCGATTGATCTACCGAGCTTGGCCCGCTTGAGAAGAAGAACAACTCACGGTGGAGCTCACAGAGGTCTGGGGAAATGGGGATTCTTTCAACTCACTGAGCTGACACGTGGTCTACTATTACATTGTCATCCTATTTATTTTTAG

Coding sequence (CDS)

ATGACGGTGATCTTACAAAATCGACGGAGAGGAACCGGCGTGGTACGGAATTCACCGGAAATTCGAAGTCCGATTGATCTACCGAGCTTGGCCCGCTTGAGAAGAAGAACAACTCACGGTGGAGCTCACAGAGGTCTGGGGAAATGGGGATTCTTTCAACTCACTGAGCTGACACGTGGTCTACTATTACATTGTCATCCTATTTATTTTTAG

Protein sequence

MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRGLLLHCHPIYF*
Homology
[Close]
BLAST of Csa3G876560 vs. TrEMBL
Match: A0A0A0LGL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876560 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG 60
          MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG
Sbjct: 1  MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG 60

Query: 61 LLLHCHPIYF 71
          LLLHCHPIYF
Sbjct: 61 LLLHCHPIYF 70

[Close]
BLAST of Csa3G876560 vs. NCBI nr
Match: gi|700204951|gb|KGN60084.1| (hypothetical protein Csa_3G876560 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG 60
          MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG
Sbjct: 1  MTVILQNRRRGTGVVRNSPEIRSPIDLPSLARLRRRTTHGGAHRGLGKWGFFQLTELTRG 60

Query: 61 LLLHCHPIYF 71
          LLLHCHPIYF
Sbjct: 61 LLLHCHPIYF 70

The following BLAST results are available for this feature:
BLAST of Csa3G876560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGL7_CUCSA2.7e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876560 PE=4 SV=1[more]
BLAST of Csa3G876560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204951|gb|KGN60084.1|3.9e-33100.00hypothetical protein Csa_3G876560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G876560.1Csa3G876560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G876560CSPI03G43830Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G876560Watermelon (97103) v2cuwmbB194
Csa3G876560Watermelon (97103) v2cuwmbB205
Csa3G876560Watermelon (97103) v2cuwmbB221
Csa3G876560Watermelon (97103) v2cuwmbB232
Csa3G876560Wax gourdcuwgoB340
Csa3G876560Wax gourdcuwgoB353
Csa3G876560Cucumber (Chinese Long) v2cucuB058
Csa3G876560Cucumber (Gy14) v1cgycuB185
Csa3G876560Cucumber (Gy14) v1cgycuB450
Csa3G876560Cucurbita maxima (Rimu)cmacuB014
Csa3G876560Cucurbita maxima (Rimu)cmacuB017
Csa3G876560Cucurbita maxima (Rimu)cmacuB129
Csa3G876560Cucurbita maxima (Rimu)cmacuB181
Csa3G876560Cucurbita maxima (Rimu)cmacuB456
Csa3G876560Cucurbita maxima (Rimu)cmacuB798
Csa3G876560Cucurbita moschata (Rifu)cmocuB005
Csa3G876560Cucurbita moschata (Rifu)cmocuB008
Csa3G876560Cucurbita moschata (Rifu)cmocuB113
Csa3G876560Cucurbita moschata (Rifu)cmocuB165
Csa3G876560Cucurbita moschata (Rifu)cmocuB443
Csa3G876560Melon (DHL92) v3.5.1cumeB197
Csa3G876560Melon (DHL92) v3.5.1cumeB222
Csa3G876560Watermelon (Charleston Gray)cuwcgB223
Csa3G876560Watermelon (Charleston Gray)cuwcgB202
Csa3G876560Watermelon (Charleston Gray)cuwcgB236
Csa3G876560Watermelon (Charleston Gray)cuwcgB249
Csa3G876560Watermelon (97103) v1cuwmB234
Csa3G876560Watermelon (97103) v1cuwmB250
Csa3G876560Watermelon (97103) v1cuwmB272
Csa3G876560Watermelon (97103) v1cuwmB280
Csa3G876560Cucurbita pepo (Zucchini)cpecuB112
Csa3G876560Cucurbita pepo (Zucchini)cpecuB548
Csa3G876560Cucurbita pepo (Zucchini)cpecuB675
Csa3G876560Cucurbita pepo (Zucchini)cpecuB776
Csa3G876560Cucurbita pepo (Zucchini)cpecuB830
Csa3G876560Bottle gourd (USVL1VR-Ls)culsiB164
Csa3G876560Bottle gourd (USVL1VR-Ls)culsiB191
Csa3G876560Bottle gourd (USVL1VR-Ls)culsiB192
Csa3G876560Bottle gourd (USVL1VR-Ls)culsiB226
Csa3G876560Cucumber (Gy14) v2cgybcuB069
Csa3G876560Cucumber (Gy14) v2cgybcuB110
Csa3G876560Melon (DHL92) v3.6.1cumedB182
Csa3G876560Melon (DHL92) v3.6.1cumedB208
Csa3G876560Silver-seed gourdcarcuB0111
Csa3G876560Silver-seed gourdcarcuB0283
Csa3G876560Silver-seed gourdcarcuB0600
Csa3G876560Silver-seed gourdcarcuB0655
Csa3G876560Silver-seed gourdcarcuB0686