Csa3G875970 (gene) Cucumber (Chinese Long) v2

NameCsa3G875970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLGC1, putative
LocationChr3 : 36674518 .. 36675139 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCCTCCATCAAGTTTGTTTGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGTATATATCTATTATGCTATACGTTTATATGATATTTATTTCATCACGTTAGGTCTTAAAACTATTGTCAAGCACACTTTGAATCGGGATGATGGAAAATGATTCAAATATGAAAGTTGAGCGTTTAAATTAAAACAAGAAATGACTGTTATAACATCTAATGACTCTCATTCGATGAGTTGTCGAACATATATATATATATAGAACTCGTTAATTTTGTGGTTTGAATGACGAGGATGATGATTATTTTCAGGAAACTGTGAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGCAAGGGAAGCAAGTGTGGAAAGCCACAATCACAAACAATTGCATTTGTGGACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGCAGTTGATCCATCCATATTGGCAGTTTCTGGGTCAGTGTGTTTGGTGAATGGTGGTCAACCGATCTTTCAATCTACACCCATCTCCTTCACATATGCTTCGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATTTCTTGTTCTTAA

mRNA sequence

ATGGTTGCCTCCATCAAGTTTGTTTGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGAAACTGTGAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGCAAGGGAAGCAAGTGTGGAAAGCCACAATCACAAACAATTGCATTTGTGGACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGCAGTTGATCCATCCATATTGGCAGTTTCTGGGTCAGTGTGTTTGGTGAATGGTGGTCAACCGATCTTTCAATCTACACCCATCTCCTTCACATATGCTTCGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATTTCTTGTTCTTAA

Coding sequence (CDS)

ATGGTTGCCTCCATCAAGTTTGTTTGTGTACTCTTCTTCTTTTGTCTCCTCTCCAAAGGAAACTGTGAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGCAAGGGAAGCAAGTGTGGAAAGCCACAATCACAAACAATTGCATTTGTGGACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGCAGTTGATCCATCCATATTGGCAGTTTCTGGGTCAGTGTGTTTGGTGAATGGTGGTCAACCGATCTTTCAATCTACACCCATCTCCTTCACATATGCTTCGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATTTCTTGTTCTTAA

Protein sequence

MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS*
BLAST of Csa3G875970 vs. TrEMBL
Match: A0A0A0LEA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.8e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS
Sbjct: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120
           LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS
Sbjct: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Csa3G875970 vs. TrEMBL
Match: A0A0A0LDN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.4e-45
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           MVASI +  +LFFFCLLSKGNCEC +NDI ISQ+TTG  V GKQ W+ATI N C+C Q S
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120
           +K DCNGFNTV+ VD SIL V+GSVCLVN GQPIF S+PISFTYA DNAFPF PL SQ++
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Csa3G875970 vs. TrEMBL
Match: A0A0A0KLZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.6e-34
Identity = 72/117 (61.54%), Postives = 82/117 (70.09%), Query Frame = 1

Query: 6   KFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDC 65
           K +  L    L+S GNC+C LN+I ISQ+ TG  + G   WK TITNNCIC QS LKLDC
Sbjct: 6   KLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDC 65

Query: 66  NGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 123
            GF T  ++DPSILA+S S CLVN GQPIF S PI+F YA    F FKPLSSQISCS
Sbjct: 66  KGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

BLAST of Csa3G875970 vs. TrEMBL
Match: V4UMI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009917mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           M A +KF+  +  F +++KGNC+C L+DI +SQ+ TG  V  KQ W+ T+ N CIC Q  
Sbjct: 1   MAAILKFLAAIMLFTIITKGNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLG 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVC-LVNGGQPIFQSTPISFTYASDNAFPFKPLSSQI 120
           LKL C GF TV+ +DPSI+A+SG  C +VN G P +  T +SF YA D +FPFKP+SSQI
Sbjct: 61  LKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQI 120

Query: 121 SCS 123
           SCS
Sbjct: 121 SCS 123

BLAST of Csa3G875970 vs. TrEMBL
Match: A0A067F358_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040068mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           M A +KF+  +  F +++KGNC+C L+DI +SQ+ TG  V  KQ W+ T+ N CIC Q  
Sbjct: 1   MAAILKFLAAIMLFTIITKGNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLE 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVC-LVNGGQPIFQSTPISFTYASDNAFPFKPLSSQI 120
           LKL C GF TV+ +DPSI+A+SG  C +VN G P +  T +SF YA D +FPFKP+SSQI
Sbjct: 61  LKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQI 120

Query: 121 SCS 123
           SCS
Sbjct: 121 SCS 123

BLAST of Csa3G875970 vs. TAIR10
Match: AT4G32110.1 (AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein)

HSP 1 Score: 87.4 bits (215), Expect = 6.6e-18
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1

Query: 6   KFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCI-CGQSSLKLD 65
           K +C++ F   +++G  +C LN +++ Q+ TG +VQ K  W+  +TN C  C   + +L 
Sbjct: 7   KLLCLVLFLAFVNQGYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELL 66

Query: 66  CNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISC 122
           C GFN+V  +D S+L  SG  CLVN G+ I     I F Y  D +F  K +   + C
Sbjct: 67  CVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

BLAST of Csa3G875970 vs. TAIR10
Match: AT4G32105.1 (AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-17
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1

Query: 6   KFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCI-CGQSSLKLD 65
           K +C++ F   +++G  +C LN +++ Q+ TG +VQ K  W+  +TN C  C     KL 
Sbjct: 7   KVLCLVLFLAFVNQGYGDCHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLS 66

Query: 66  CNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISC 122
           C GF +V  V  S+L+ SG +CL+N G  IF      F Y  D +F  K +   I C
Sbjct: 67  CVGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGVIVC 123

BLAST of Csa3G875970 vs. TAIR10
Match: AT4G32100.1 (AT4G32100.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 1

Query: 6   KFVCVLFFFCLLSKG--NCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKL 65
           KF+C++  F  +++G  +    L  +++ Q+ TG++V+ K  W+  + N+  C  +   L
Sbjct: 7   KFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTL 66

Query: 66  DCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 123
            C  F +V  +D  +L+ SG  CL+  G  I     ISF Y  D +F  K +   I+CS
Sbjct: 67  SCVRFKSVTPIDSKVLSKSGDTCLLGNGDSIHD---ISFKYVWDTSFDLKVVDGYIACS 122

BLAST of Csa3G875970 vs. NCBI nr
Match: gi|700204940|gb|KGN60073.1| (hypothetical protein Csa_3G875970 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 9.7e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS
Sbjct: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120
           LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS
Sbjct: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Csa3G875970 vs. NCBI nr
Match: gi|700204942|gb|KGN60075.1| (hypothetical protein Csa_3G875990 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 7.8e-45
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           MVASI +  +LFFFCLLSKGNCEC +NDI ISQ+TTG  V GKQ W+ATI N C+C Q S
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120
           +K DCNGFNTV+ VD SIL V+GSVCLVN GQPIF S+PISFTYA DNAFPF PL SQ++
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Csa3G875970 vs. NCBI nr
Match: gi|659133309|ref|XP_008466664.1| (PREDICTED: uncharacterized protein LOC103504019 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 1

Query: 21  NCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSILA 80
           NC+C +NDI ISQ+TTG  V GKQ W+ATI N C+C Q S+K DCNGFNTV+ VD SIL 
Sbjct: 8   NCQCSINDIVISQSTTGKEVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILM 67

Query: 81  VSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 123
           V+GSVCLVN GQPIF S+PISFTYA DNAF FKPL SQ++CS
Sbjct: 68  VAGSVCLVNNGQPIFNSSPISFTYAWDNAFSFKPLFSQVACS 109

BLAST of Csa3G875970 vs. NCBI nr
Match: gi|700193567|gb|KGN48771.1| (hypothetical protein Csa_6G500630 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33
Identity = 72/117 (61.54%), Postives = 82/117 (70.09%), Query Frame = 1

Query: 6   KFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDC 65
           K +  L    L+S GNC+C LN+I ISQ+ TG  + G   WK TITNNCIC QS LKLDC
Sbjct: 6   KLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDC 65

Query: 66  NGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 123
            GF T  ++DPSILA+S S CLVN GQPIF S PI+F YA    F FKPLSSQISCS
Sbjct: 66  KGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

BLAST of Csa3G875970 vs. NCBI nr
Match: gi|659080150|ref|XP_008440637.1| (PREDICTED: uncharacterized protein LOC103484995 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 69/122 (56.56%), Postives = 83/122 (68.03%), Query Frame = 1

Query: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60
           M  S+K +  L     +S GNC+CVLN+I ISQ  TG  + G   W  TITNNCIC QS 
Sbjct: 1   MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60

Query: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120
           LKLDC GF T  ++DPSIL++S + CLVN G+PIF S PI+F YA    F FKP+SSQIS
Sbjct: 61  LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LEA1_CUCSA6.8e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875970 PE=4 SV=1[more]
A0A0A0LDN0_CUCSA5.4e-4572.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875990 PE=4 SV=1[more]
A0A0A0KLZ6_CUCSA9.6e-3461.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500630 PE=4 SV=1[more]
V4UMI7_9ROSI2.4e-3252.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009917mg PE=4 SV=1[more]
A0A067F358_CITSI2.4e-3252.85Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040068mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G32110.16.6e-1835.90 Beta-1,3-N-Acetylglucosaminyltransferase family protein[more]
AT4G32105.12.5e-1735.90 Beta-1,3-N-Acetylglucosaminyltransferase family protein[more]
AT4G32100.11.4e-1230.25 Beta-1,3-N-Acetylglucosaminyltransferase family protein[more]
Match NameE-valueIdentityDescription
gi|700204940|gb|KGN60073.1|9.7e-64100.00hypothetical protein Csa_3G875970 [Cucumis sativus][more]
gi|700204942|gb|KGN60075.1|7.8e-4572.13hypothetical protein Csa_3G875990 [Cucumis sativus][more]
gi|659133309|ref|XP_008466664.1|1.5e-3570.59PREDICTED: uncharacterized protein LOC103504019 [Cucumis melo][more]
gi|700193567|gb|KGN48771.1|1.4e-3361.54hypothetical protein Csa_6G500630 [Cucumis sativus][more]
gi|659080150|ref|XP_008440637.1|1.2e-3256.56PREDICTED: uncharacterized protein LOC103484995 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G875970.1Csa3G875970.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33184FAMILY NOT NAMEDcoord: 1..122
score: 5.1
NoneNo IPR availablePANTHERPTHR33184:SF11BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEINcoord: 1..122
score: 5.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None