Csa3G857020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G857020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 35834779 .. 35835242 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGGTTAGGTTGAAGAAAAATGAAGGGCGTAAAATTAAAGCTGAATATGAAAAATTGTTTATGGAGAAAGCGCTTGATTTTGAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGTAGGGAACGGTTTTGAAAAGGACGGGAAAAAGGCGATGATCGGAGAAAGAGAGAGAAATAAAAAATGAAAATATTCTTGTTTGAAGATTGTAGGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

mRNA sequence

ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

Coding sequence (CDS)

ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

Protein sequence

MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAAPPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN*
Homology
[Close]
BLAST of Csa3G857020 vs. TrEMBL
Match: A0A0A0LIX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857020 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60
          MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA
Sbjct: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60

Query: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 96
          PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN
Sbjct: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95

[Close]
BLAST of Csa3G857020 vs. NCBI nr
Match: gi|700204828|gb|KGN59961.1| (hypothetical protein Csa_3G857020 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 5.0e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60
          MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA
Sbjct: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60

Query: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 96
          PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN
Sbjct: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95

The following BLAST results are available for this feature:
BLAST of Csa3G857020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIX4_CUCSA3.5e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857020 PE=4 SV=1[more]
BLAST of Csa3G857020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204828|gb|KGN59961.1|5.0e-47100.00hypothetical protein Csa_3G857020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G857020.1Csa3G857020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G857020CSPI03G42720Wild cucumber (PI 183967)cpicuB120
Csa3G857020CsGy3G040250Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G857020Watermelon (97103) v2cuwmbB172
Csa3G857020Watermelon (97103) v2cuwmbB216
Csa3G857020Watermelon (97103) v2cuwmbB248
Csa3G857020Wax gourdcuwgoB225
Csa3G857020Wax gourdcuwgoB318
Csa3G857020Wax gourdcuwgoB327
Csa3G857020Cucumber (Chinese Long) v2cucuB051
Csa3G857020Cucumber (Chinese Long) v2cucuB112
Csa3G857020Cucumber (Gy14) v1cgycuB174
Csa3G857020Cucumber (Gy14) v1cgycuB327
Csa3G857020Cucumber (Gy14) v1cgycuB478
Csa3G857020Cucurbita maxima (Rimu)cmacuB017
Csa3G857020Cucurbita maxima (Rimu)cmacuB183
Csa3G857020Cucurbita maxima (Rimu)cmacuB444
Csa3G857020Cucurbita maxima (Rimu)cmacuB661
Csa3G857020Cucurbita maxima (Rimu)cmacuB795
Csa3G857020Cucurbita moschata (Rifu)cmocuB008
Csa3G857020Cucurbita moschata (Rifu)cmocuB167
Csa3G857020Cucurbita moschata (Rifu)cmocuB431
Csa3G857020Cucurbita moschata (Rifu)cmocuB650
Csa3G857020Cucurbita moschata (Rifu)cmocuB788
Csa3G857020Melon (DHL92) v3.5.1cumeB203
Csa3G857020Melon (DHL92) v3.5.1cumeB222
Csa3G857020Melon (DHL92) v3.5.1cumeB258
Csa3G857020Watermelon (Charleston Gray)cuwcgB203
Csa3G857020Watermelon (Charleston Gray)cuwcgB231
Csa3G857020Watermelon (Charleston Gray)cuwcgB263
Csa3G857020Watermelon (97103) v1cuwmB210
Csa3G857020Watermelon (97103) v1cuwmB244
Csa3G857020Watermelon (97103) v1cuwmB257
Csa3G857020Watermelon (97103) v1cuwmB273
Csa3G857020Cucurbita pepo (Zucchini)cpecuB065
Csa3G857020Cucurbita pepo (Zucchini)cpecuB110
Csa3G857020Cucurbita pepo (Zucchini)cpecuB556
Csa3G857020Cucurbita pepo (Zucchini)cpecuB779
Csa3G857020Cucurbita pepo (Zucchini)cpecuB828
Csa3G857020Bottle gourd (USVL1VR-Ls)culsiB171
Csa3G857020Bottle gourd (USVL1VR-Ls)culsiB192
Csa3G857020Bottle gourd (USVL1VR-Ls)culsiB240
Csa3G857020Cucumber (Gy14) v2cgybcuB066
Csa3G857020Cucumber (Gy14) v2cgybcuB257
Csa3G857020Melon (DHL92) v3.6.1cumedB189
Csa3G857020Melon (DHL92) v3.6.1cumedB208
Csa3G857020Melon (DHL92) v3.6.1cumedB247
Csa3G857020Silver-seed gourdcarcuB0111
Csa3G857020Silver-seed gourdcarcuB0203
Csa3G857020Silver-seed gourdcarcuB0438
Csa3G857020Silver-seed gourdcarcuB0961
Csa3G857020Silver-seed gourdcarcuB0992