Csa3G822470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G822470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 32340472 .. 32341405 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAATTTTATTTCATTGTTTTTATTAGAAAGTTTTCACCTTTTGCATGCATGAAAATGGTTATAACTTGGGATACACTTTTCTACCTAACTCTCAAAAAAACTAAATTACCAGAAAATTTTGGGTTCATATTCTAAGCAAAAAGATAGTGAGTTCCGAGGCGGCATTCCCATCGGGGTTAATCATAAACAAAGCTTCCGAGTCTGCACTTCCAACAACTCGTTCAAACTCGGCTCTCATATACACCAATGCACCCAGTTCCGAGCACCCGCCGGCAGCTTTTGTTCCATCATGGAGCACTGGAATGACCCCAGCTCCAACAGACACGCTTCGAATGGTGTTCAGGACATGTCGGTCATATGCCTCACAAGTGCGAGAGAGGGCAAGACCAGATTCCGTTCCGTTGCAGTACATGGTCCAGGAGGGGTGTTGGAGGAGCTTCGTGGGTCGAGCTCGGCCAGGGAGTTTGTGGGAGTGGAGGGCAATGCGGAGGACGCCAGAGGACATCTCTTTAAGAAGAGCAGTGGTGGAGATGTGGAGATGGAGTAATGTGAGGGGTTCGGTACGAGGGTCAAGCTGTAGGGAGAAGGTGACATGGCCATGGCGGTGGCCAAAGAGGGTGCCGGTGAGCTTACGGCGGAGAGTGATGAGAGAGAGGGCATTGCGGCGGTGGAGGAAGAAACGGAAGAGGGAGTGGAGGAGGGAGGAGGGGCTGTGAGAAGAGGTGGTTGAACAAGGCTTGAGAACAATGGCTGTGTCTGCGGAGCTGGTAGATCTGCTCAGACTACTCAGCTCAAGGTGCCGGCGTTGTCTCATTTTTTCACGGCGGAGAGAGAGGGGGGGAGGGACGCGGTGCCGGTGGGGATATTGAAAGAGAGAGAGTGGAGCAACAAAAAGAGTGGTAATGTATCATATTTATACAGCACAACTCAAT

mRNA sequence

ATGACCCCAGCTCCAACAGACACGCTTCGAATGGTGTTCAGGACATGTCGGTCATATGCCTCACAAGTGCGAGAGAGGGCAAGACCAGATTCCGTTCCGTTGCAGTACATGGTCCAGGAGGGGTGTTGGAGGAGCTTCGTGGGTCGAGCTCGGCCAGGGAGTTTGTGGGAGTGGAGGGCAATGCGGAGGACGCCAGAGGACATCTCTTTAAGAAGAGCAGTGGTGGAGATGTGGAGATGGAGTAATGTGAGGGGTTCGGTACGAGGGTCAAGCTGTAGGGAGAAGGTGACATGGCCATGGCGGTGGCCAAAGAGGGTGCCGGTGAGCTTACGGCGGAGAGTGATGAGAGAGAGGGCATTGCGGCGGTGGAGGAAGAAACGGAAGAGGGAGTGGAGGAGGGAGGAGGGGCTGTGA

Coding sequence (CDS)

ATGACCCCAGCTCCAACAGACACGCTTCGAATGGTGTTCAGGACATGTCGGTCATATGCCTCACAAGTGCGAGAGAGGGCAAGACCAGATTCCGTTCCGTTGCAGTACATGGTCCAGGAGGGGTGTTGGAGGAGCTTCGTGGGTCGAGCTCGGCCAGGGAGTTTGTGGGAGTGGAGGGCAATGCGGAGGACGCCAGAGGACATCTCTTTAAGAAGAGCAGTGGTGGAGATGTGGAGATGGAGTAATGTGAGGGGTTCGGTACGAGGGTCAAGCTGTAGGGAGAAGGTGACATGGCCATGGCGGTGGCCAAAGAGGGTGCCGGTGAGCTTACGGCGGAGAGTGATGAGAGAGAGGGCATTGCGGCGGTGGAGGAAGAAACGGAAGAGGGAGTGGAGGAGGGAGGAGGGGCTGTGA

Protein sequence

MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERALRRWRKKRKREWRREEGL*
Homology
[Close]
BLAST of Csa3G822470 vs. TrEMBL
Match: A0A0A0LFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 7.8e-77
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA 60
           MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA
Sbjct: 1   MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA 60

Query: 61  MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL 120
           MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL
Sbjct: 61  MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL 120

Query: 121 RRWRKKRKREWRREEGL 138
           RRWRKKRKREWRREEGL
Sbjct: 121 RRWRKKRKREWRREEGL 137

[Close]
BLAST of Csa3G822470 vs. NCBI nr
Match: gi|700204364|gb|KGN59497.1| (hypothetical protein Csa_3G822470 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-76
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA 60
           MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA
Sbjct: 1   MTPAPTDTLRMVFRTCRSYASQVRERARPDSVPLQYMVQEGCWRSFVGRARPGSLWEWRA 60

Query: 61  MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL 120
           MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL
Sbjct: 61  MRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKVTWPWRWPKRVPVSLRRRVMRERAL 120

Query: 121 RRWRKKRKREWRREEGL 138
           RRWRKKRKREWRREEGL
Sbjct: 121 RRWRKKRKREWRREEGL 137

The following BLAST results are available for this feature:
BLAST of Csa3G822470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFY2_CUCSA7.8e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1[more]
BLAST of Csa3G822470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204364|gb|KGN59497.1|1.1e-76100.00hypothetical protein Csa_3G822470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU105797cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G822470.1Csa3G822470.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105797CU105797transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G822470CSPI03G38310Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G822470Watermelon (97103) v2cuwmbB186
Csa3G822470Wax gourdcuwgoB220
Csa3G822470Cucumber (Gy14) v1cgycuB478
Csa3G822470Cucurbita maxima (Rimu)cmacuB239
Csa3G822470Cucurbita maxima (Rimu)cmacuB831
Csa3G822470Cucurbita moschata (Rifu)cmocuB226
Csa3G822470Cucurbita moschata (Rifu)cmocuB819
Csa3G822470Melon (DHL92) v3.5.1cumeB223
Csa3G822470Watermelon (Charleston Gray)cuwcgB194
Csa3G822470Watermelon (97103) v1cuwmB198
Csa3G822470Cucurbita pepo (Zucchini)cpecuB597
Csa3G822470Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G822470Cucumber (Gy14) v2cgybcuB110
Csa3G822470Melon (DHL92) v3.6.1cumedB207
Csa3G822470Silver-seed gourdcarcuB0345