Csa3G813810 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G813810
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 31378029 .. 31378441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTTCTATTTGAGAGATCAATGAAGAGTAACAGCTTCTTGTCATCTTCTTCACAACTCGAAATTTCCTCCGATAATCTCCTCCGCCACAGACACCACCGCCGTTCCAGATCCTTCGGCTGCCCCCCCCCAAAACCCCCCCCCGCCGTTCCAGATCCTTCGGCTGTGTCTCCAGCCTCCTCCATTTCTTCTCTAACAACCACACCCGCCGCAACAAATCAATCACATTCGGTATTTATTCTTCTTCTTCACAATCTTCTTCATCAGTTCCATTCATTCAAATTTTAACCTAATTTCACCCTAAAATCTCTCTGTTTCTCAGTCCACAACAGCATTCACGAACTCCACGATACCATTTCCATATCCAAAATTTCTCAATCTCCAAAACATGATTCCGCCGCTAATCTCCTAG

mRNA sequence

ATGAAGAGTAACAGCTTCTTGTCATCTTCTTCACAACTCGAAATTTCCTCCGATAATCTCCTCCGCCACAGACACCACCGCCGTTCCAGATCCTTCGGCTGCCCCCCCCCAAAACCCCCCCCCGCCGTTCCAGATCCTTCGGCTGTGTCTCCAGCCTCCTCCATTTCTTCTCTAACAACCACACCCGCCGCAACAAATCAATCACATTCGTCCACAACAGCATTCACGAACTCCACGATACCATTTCCATATCCAAAATTTCTCAATCTCCAAAACATGATTCCGCCGCTAATCTCCTAG

Coding sequence (CDS)

ATGAAGAGTAACAGCTTCTTGTCATCTTCTTCACAACTCGAAATTTCCTCCGATAATCTCCTCCGCCACAGACACCACCGCCGTTCCAGATCCTTCGGCTGCCCCCCCCCAAAACCCCCCCCCGCCGTTCCAGATCCTTCGGCTGTGTCTCCAGCCTCCTCCATTTCTTCTCTAACAACCACACCCGCCGCAACAAATCAATCACATTCGTCCACAACAGCATTCACGAACTCCACGATACCATTTCCATATCCAAAATTTCTCAATCTCCAAAACATGATTCCGCCGCTAATCTCCTAG

Protein sequence

MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTTTPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS*

Homology

[Close]

BLAST of Csa3G813810 vs. TrEMBL
Match: A0A0A0LC16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813810 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT 60
           MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT
Sbjct: 1   MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT 60

Query: 61  TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS 100
           TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS
Sbjct: 61  TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS 99

[Close]

BLAST of Csa3G813810 vs. NCBI nr
Match: gi|700204230|gb|KGN59363.1| (hypothetical protein Csa_3G813810 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT 60
           MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT
Sbjct: 1   MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGCPPPKPPPAVPDPSAVSPASSISSLTT 60

Query: 61  TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS 100
           TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS
Sbjct: 61  TPAATNQSHSSTTAFTNSTIPFPYPKFLNLQNMIPPLIS 99

[Close]

BLAST of Csa3G813810 vs. NCBI nr
Match: gi|778684978|ref|XP_011652136.1| (PREDICTED: uncharacterized protein LOC105434989 isoform X1 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1


Query: 1  MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGC 35
          MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGC
Sbjct: 1  MKSNSFLSSSSQLEISSDNLLRHRHHRRSRSFGC 34

The following BLAST results are available for this feature:

BLAST of Csa3G813810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC16_CUCSA	1.7e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813810 PE=4 SV=1	[more]

BLAST of Csa3G813810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204230\|gb\|KGN59363.1\|	2.5e-49	100.00	hypothetical protein Csa_3G813810 [Cucumis sativus]	[more]
gi\|778684978\|ref\|XP_011652136.1\|	8.6e-10	100.00	PREDICTED: uncharacterized protein LOC105434989 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G813810.1	Csa3G813810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G813810	Cucumber (Gy14) v1	cgycuB478
Csa3G813810	Cucurbita maxima (Rimu)	cmacuB239
Csa3G813810	Cucurbita maxima (Rimu)	cmacuB826
Csa3G813810	Cucurbita moschata (Rifu)	cmocuB226
Csa3G813810	Cucurbita moschata (Rifu)	cmocuB816
Csa3G813810	Melon (DHL92) v3.5.1	cumeB223
Csa3G813810	Watermelon (Charleston Gray)	cuwcgB194
Csa3G813810	Watermelon (97103) v1	cuwmB198
Csa3G813810	Cucurbita pepo (Zucchini)	cpecuB597
Csa3G813810	Cucurbita pepo (Zucchini)	cpecuB864
Csa3G813810	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G813810	Cucumber (Gy14) v2	cgybcuB110
Csa3G813810	Melon (DHL92) v3.6.1	cumedB207
Csa3G813810	Silver-seed gourd	carcuB0172
Csa3G813810	Silver-seed gourd	carcuB0276
Csa3G813810	Watermelon (97103) v2	cuwmbB186
Csa3G813810	Wax gourd	cuwgoB223
Csa3G813810	Wax gourd	cuwgoB331