Csa3G808890 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G808890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 30953507 .. 30953841 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGTCCATCTCCTCTCTCTCTCTCCTCTTTCTGACATCGATTAACCTTTCATCCTGATTTTCTGTTTAATTAGGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

mRNA sequence

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

Coding sequence (CDS)

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

Protein sequence

MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHRLLSIASLPTHFPAAAIHTRGVAARSSG*
Homology
[Close]
BLAST of Csa3G808890 vs. TrEMBL
Match: A0A0A0LGY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808890 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60
          MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 88
          LLSIASLPTHFPAAAIHTRGVAARSSG
Sbjct: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 87

[Close]
BLAST of Csa3G808890 vs. NCBI nr
Match: gi|700204178|gb|KGN59311.1| (hypothetical protein Csa_3G808890 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.8e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60
          MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 88
          LLSIASLPTHFPAAAIHTRGVAARSSG
Sbjct: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 87

The following BLAST results are available for this feature:
BLAST of Csa3G808890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGY9_CUCSA2.0e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808890 PE=4 SV=1[more]
BLAST of Csa3G808890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204178|gb|KGN59311.1|2.8e-41100.00hypothetical protein Csa_3G808890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110061cucumber EST collection version 3.0transcribed_cluster
CU147357cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G808890.1Csa3G808890.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU147357CU147357transcribed_cluster
CU110061CU110061transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G808890CsGy3G034030Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G808890Silver-seed gourdcarcuB0172
Csa3G808890Silver-seed gourdcarcuB0276
Csa3G808890Watermelon (97103) v2cuwmbB186
Csa3G808890Wax gourdcuwgoB223
Csa3G808890Cucumber (Chinese Long) v2cucuB134
Csa3G808890Cucumber (Gy14) v1cgycuB344
Csa3G808890Cucurbita maxima (Rimu)cmacuB239
Csa3G808890Cucurbita maxima (Rimu)cmacuB826
Csa3G808890Cucurbita moschata (Rifu)cmocuB226
Csa3G808890Cucurbita moschata (Rifu)cmocuB816
Csa3G808890Melon (DHL92) v3.5.1cumeB223
Csa3G808890Watermelon (Charleston Gray)cuwcgB194
Csa3G808890Watermelon (97103) v1cuwmB198
Csa3G808890Cucurbita pepo (Zucchini)cpecuB597
Csa3G808890Cucurbita pepo (Zucchini)cpecuB864
Csa3G808890Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G808890Melon (DHL92) v3.6.1cumedB207