Csa3G800680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G800680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 30793969 .. 30794379 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACGTCCTTTGTTAGCCAATTTATACAAGGGTACCTTTTGATTTTCGTTTCCTCGTTTGCATGGGTCATTCTCCATTTGCTAAACATTGTAGTAGGGGTCGTCCAAATGGGAGAATCCCGGTATTTCGGAAGCGATACCCAAAATCAGAGAGAGGAGAGATACCCCATCCCGTTGACATCCGCCTTGAATACGATCACTGATCGAAGGAGTGGAAGAAAAACAAGGGTCTACATAGGGGCTGGAATTTCTTTCGGAAGTCTTGACCGCCTGGAAGCTGCTATTTCTCTTCGGTTGAGTCAAGCTATCACAAAGTTGGGCCGAGTGGAAGGTCTTCCCATGCTTTACGAGGTAAGGGGACCGGGCGTGGCCCAAGACGAGTCATTTTCAGTTCTTCTACGATCTTGA

mRNA sequence

ATGCTTACGTCCTTTGTTAGCCAATTTATACAAGGGTACCTTTTGATTTTCGTTTCCTCGTTTGCATGGGTCATTCTCCATTTGCTAAACATTGTAGTAGGGGTCGTCCAAATGGGAGAATCCCGGTATTTCGGAAGCGATACCCAAAATCAGAGAGAGGAGAGATACCCCATCCCGTTGACATCCGCCTTGAATACGATCACTGATCGAAGGAGTGGAAGAAAAACAAGGGTCTACATAGGGGCTGGAATTTCTTTCGGAAGTCTTGACCGCCTGGAAGCTGCTATTTCTCTTCGGTTGAGTCAAGCTATCACAAAGTTGGGCCGAGTGGAAGGTCTTCCCATGCTTTACGAGGTAAGGGGACCGGGCGTGGCCCAAGACGAGTCATTTTCAGTTCTTCTACGATCTTGA

Coding sequence (CDS)

ATGCTTACGTCCTTTGTTAGCCAATTTATACAAGGGTACCTTTTGATTTTCGTTTCCTCGTTTGCATGGGTCATTCTCCATTTGCTAAACATTGTAGTAGGGGTCGTCCAAATGGGAGAATCCCGGTATTTCGGAAGCGATACCCAAAATCAGAGAGAGGAGAGATACCCCATCCCGTTGACATCCGCCTTGAATACGATCACTGATCGAAGGAGTGGAAGAAAAACAAGGGTCTACATAGGGGCTGGAATTTCTTTCGGAAGTCTTGACCGCCTGGAAGCTGCTATTTCTCTTCGGTTGAGTCAAGCTATCACAAAGTTGGGCCGAGTGGAAGGTCTTCCCATGCTTTACGAGGTAAGGGGACCGGGCGTGGCCCAAGACGAGTCATTTTCAGTTCTTCTACGATCTTGA

Protein sequence

MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPLTSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVRGPGVAQDESFSVLLRS*

Homology

[Close]

BLAST of Csa3G800680 vs. TrEMBL
Match: A0A0A0LB91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800680 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL 60
           MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL
Sbjct: 1   MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL 60

Query: 61  TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR 120
           TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR
Sbjct: 61  TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR 120

Query: 121 GPGVAQDESFSVLLRS 137
           GPGVAQDESFSVLLRS
Sbjct: 121 GPGVAQDESFSVLLRS 136

[Close]

BLAST of Csa3G800680 vs. NCBI nr
Match: gi|700204152|gb|KGN59285.1| (hypothetical protein Csa_3G800680 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL 60
           MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL
Sbjct: 1   MLTSFVSQFIQGYLLIFVSSFAWVILHLLNIVVGVVQMGESRYFGSDTQNQREERYPIPL 60

Query: 61  TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR 120
           TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR
Sbjct: 61  TSALNTITDRRSGRKTRVYIGAGISFGSLDRLEAAISLRLSQAITKLGRVEGLPMLYEVR 120

Query: 121 GPGVAQDESFSVLLRS 137
           GPGVAQDESFSVLLRS
Sbjct: 121 GPGVAQDESFSVLLRS 136

The following BLAST results are available for this feature:

BLAST of Csa3G800680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB91_CUCSA	1.5e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800680 PE=4 SV=1	[more]

BLAST of Csa3G800680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204152\|gb\|KGN59285.1\|	2.1e-67	100.00	hypothetical protein Csa_3G800680 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G800680.1	Csa3G800680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G800680	CSPI03G36310	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G800680	Silver-seed gourd	carcuB0172
Csa3G800680	Silver-seed gourd	carcuB0276
Csa3G800680	Watermelon (97103) v2	cuwmbB186
Csa3G800680	Wax gourd	cuwgoB222
Csa3G800680	Cucumber (Gy14) v1	cgycuB344
Csa3G800680	Cucurbita maxima (Rimu)	cmacuB239
Csa3G800680	Cucurbita maxima (Rimu)	cmacuB826
Csa3G800680	Cucurbita moschata (Rifu)	cmocuB226
Csa3G800680	Cucurbita moschata (Rifu)	cmocuB816
Csa3G800680	Melon (DHL92) v3.5.1	cumeB223
Csa3G800680	Watermelon (Charleston Gray)	cuwcgB194
Csa3G800680	Watermelon (97103) v1	cuwmB198
Csa3G800680	Cucurbita pepo (Zucchini)	cpecuB597
Csa3G800680	Cucurbita pepo (Zucchini)	cpecuB856
Csa3G800680	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G800680	Cucumber (Gy14) v2	cgybcuB110
Csa3G800680	Melon (DHL92) v3.6.1	cumedB207