Csa3G798620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G798620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 30734612 .. 30734983 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGTACCTTAAAATTCACAAAGTGCCACAGTATCCACTCGTAAATTAAGCCATATCTTGTCTTGTATCCCTGGGCAGACAGTTTCCCACTTCACTTTTGGTACATTTTATTTGAGCTAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

mRNA sequence

ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

Coding sequence (CDS)

ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

Protein sequence

MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGEGYLCFRVQPVSGGGSDSDWFQLVS*
Homology
[Close]
BLAST of Csa3G798620 vs. TrEMBL
Match: A0A0A0LB82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G798620 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60
          MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE
Sbjct: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60

Query: 61 GYLCFRVQPVSGGGSDSDWFQLVS 85
          GYLCFRVQPVSGGGSDSDWFQLVS
Sbjct: 61 GYLCFRVQPVSGGGSDSDWFQLVS 84

[Close]
BLAST of Csa3G798620 vs. NCBI nr
Match: gi|700204142|gb|KGN59275.1| (hypothetical protein Csa_3G798620 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.5e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60
          MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE
Sbjct: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60

Query: 61 GYLCFRVQPVSGGGSDSDWFQLVS 85
          GYLCFRVQPVSGGGSDSDWFQLVS
Sbjct: 61 GYLCFRVQPVSGGGSDSDWFQLVS 84

The following BLAST results are available for this feature:
BLAST of Csa3G798620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB82_CUCSA6.6e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G798620 PE=4 SV=1[more]
BLAST of Csa3G798620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204142|gb|KGN59275.1|9.5e-42100.00hypothetical protein Csa_3G798620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G798620.1Csa3G798620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G798620CsGy3G033700Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G798620Watermelon (97103) v2cuwmbB186
Csa3G798620Wax gourdcuwgoB222
Csa3G798620Cucumber (Gy14) v1cgycuB344
Csa3G798620Cucurbita maxima (Rimu)cmacuB239
Csa3G798620Cucurbita moschata (Rifu)cmocuB226
Csa3G798620Melon (DHL92) v3.5.1cumeB223
Csa3G798620Watermelon (Charleston Gray)cuwcgB194
Csa3G798620Watermelon (97103) v1cuwmB198
Csa3G798620Cucurbita pepo (Zucchini)cpecuB597
Csa3G798620Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G798620Melon (DHL92) v3.6.1cumedB207
Csa3G798620Silver-seed gourdcarcuB0276