Csa3G797600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G797600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 30717791 .. 30717979 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTCACAGTTTCCATTAAAGCTCCTTCAACCATGAACCCTGGTTTGGGGCCTTCCGGTTGCCTCTTAGTGCAGATGACTGTGCCTTTGGCCTTGGCTTCAGCCTTCAGCTCGTCATTCTTCACCTTCCTCAAGCGAAATTCCTCGGTGCATCGAGAAGGCTGCACGTGCTCAACTCTCACATGA

mRNA sequence

ATGGGAGTCACAGTTTCCATTAAAGCTCCTTCAACCATGAACCCTGGTTTGGGGCCTTCCGGTTGCCTCTTAGTGCAGATGACTGTGCCTTTGGCCTTGGCTTCAGCCTTCAGCTCGTCATTCTTCACCTTCCTCAAGCGAAATTCCTCGGTGCATCGAGAAGGCTGCACGTGCTCAACTCTCACATGA

Coding sequence (CDS)

ATGGGAGTCACAGTTTCCATTAAAGCTCCTTCAACCATGAACCCTGGTTTGGGGCCTTCCGGTTGCCTCTTAGTGCAGATGACTGTGCCTTTGGCCTTGGCTTCAGCCTTCAGCTCGTCATTCTTCACCTTCCTCAAGCGAAATTCCTCGGTGCATCGAGAAGGCTGCACGTGCTCAACTCTCACATGA

Protein sequence

MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCSTLT*
Homology
[Close]
BLAST of Csa3G797600 vs. TrEMBL
Match: A0A0A0LGW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797600 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.9e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST 60
          MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST
Sbjct: 1  MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST 60

Query: 61 LT 63
          LT
Sbjct: 61 LT 62

[Close]
BLAST of Csa3G797600 vs. NCBI nr
Match: gi|700204138|gb|KGN59271.1| (hypothetical protein Csa_3G797600 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST 60
          MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST
Sbjct: 1  MGVTVSIKAPSTMNPGLGPSGCLLVQMTVPLALASAFSSSFFTFLKRNSSVHREGCTCST 60

Query: 61 LT 63
          LT
Sbjct: 61 LT 62

The following BLAST results are available for this feature:
BLAST of Csa3G797600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW6_CUCSA9.9e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797600 PE=4 SV=1[more]
BLAST of Csa3G797600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204138|gb|KGN59271.1|1.4e-26100.00hypothetical protein Csa_3G797600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU098479cucumber EST collection version 3.0transcribed_cluster
CU100293cucumber EST collection version 3.0transcribed_cluster
CU103266cucumber EST collection version 3.0transcribed_cluster
CU151319cucumber EST collection version 3.0transcribed_cluster
CU172272cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G797600.1Csa3G797600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103266CU103266transcribed_cluster
CU100293CU100293transcribed_cluster
CU098479CU098479transcribed_cluster
CU172272CU172272transcribed_cluster
CU151319CU151319transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G797600Cucumber (Gy14) v1cgycuB344
Csa3G797600Cucurbita maxima (Rimu)cmacuB239
Csa3G797600Cucurbita maxima (Rimu)cmacuB816
Csa3G797600Cucurbita moschata (Rifu)cmocuB226
Csa3G797600Cucurbita moschata (Rifu)cmocuB808
Csa3G797600Melon (DHL92) v3.5.1cumeB223
Csa3G797600Watermelon (Charleston Gray)cuwcgB194
Csa3G797600Watermelon (97103) v1cuwmB198
Csa3G797600Cucurbita pepo (Zucchini)cpecuB597
Csa3G797600Cucurbita pepo (Zucchini)cpecuB861
Csa3G797600Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G797600Cucumber (Gy14) v2cgybcuB110
Csa3G797600Melon (DHL92) v3.6.1cumedB207
Csa3G797600Silver-seed gourdcarcuB0276
Csa3G797600Silver-seed gourdcarcuB0700
Csa3G797600Watermelon (97103) v2cuwmbB186
Csa3G797600Wax gourdcuwgoB222