Csa3G778970 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G778970
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Harpin inducing protein 1-like 18; contains IPR004864 (Late embryogenesis abundant protein, LEA-14)
Location	Chr3 : 30157904 .. 30158479 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCTCTATATGGTGTCTTCTAATATCCGTCATTATTGCGTTCGCTATATCTTTTGGGGGGTCTTTATTGATCTTATGGCTTATTTTCATAACCAACAAGATCAAATTCGATGTAACCGATGCCATTCTTACTCAATTCAACTTCACCAACAATGACACTCAACTCCATTACAATCTCGGTGTTTTCTTCACCATTAGAAACCCTAATAAGCAAATAGGAATCTACTATGACACCATTGAAGCAACTGCAATGTATAAAGGTCAAAACTTTGACACCAGATTGCTAACCCCTTTTTACCAAGGCTCGAGGACTACAAGCTTACTTAAAGGACGATTTCAAGGGCAGCGGGTTGTGGTAATTCCCAACAACACGGTTTCTGAATTAAAGTCTGAGAAACTTTCTGGGGTTTATTCAATTGAGGTCAAATTTCGTCTTTCGTGGAGGTTGAAATTAGGGCTTTATAAATTCATTAGAGTTAGGCCTAAAGTAGGATGTGGTTTCCAAGTTCCATTAACTTCTAGTGGAACTTCTTCTTTTCAGAATGCTATTGGTTGTGATGTTGATTATTGA

mRNA sequence

ATGGCACGCTCTATATGGTGTCTTCTAATATCCGTCATTATTGCGTTCGCTATATCTTTTGGGGGGTCTTTATTGATCTTATGGCTTATTTTCATAACCAACAAGATCAAATTCGATGTAACCGATGCCATTCTTACTCAATTCAACTTCACCAACAATGACACTCAACTCCATTACAATCTCGGTGTTTTCTTCACCATTAGAAACCCTAATAAGCAAATAGGAATCTACTATGACACCATTGAAGCAACTGCAATGTATAAAGGTCAAAACTTTGACACCAGATTGCTAACCCCTTTTTACCAAGGCTCGAGGACTACAAGCTTACTTAAAGGACGATTTCAAGGGCAGCGGGTTGTGGTAATTCCCAACAACACGGTTTCTGAATTAAAGTCTGAGAAACTTTCTGGGGTTTATTCAATTGAGGTCAAATTTCGTCTTTCGTGGAGGTTGAAATTAGGGCTTTATAAATTCATTAGAGTTAGGCCTAAAGTAGGATGTGGTTTCCAAGTTCCATTAACTTCTAGTGGAACTTCTTCTTTTCAGAATGCTATTGGTTGTGATGTTGATTATTGA

Coding sequence (CDS)

ATGGCACGCTCTATATGGTGTCTTCTAATATCCGTCATTATTGCGTTCGCTATATCTTTTGGGGGGTCTTTATTGATCTTATGGCTTATTTTCATAACCAACAAGATCAAATTCGATGTAACCGATGCCATTCTTACTCAATTCAACTTCACCAACAATGACACTCAACTCCATTACAATCTCGGTGTTTTCTTCACCATTAGAAACCCTAATAAGCAAATAGGAATCTACTATGACACCATTGAAGCAACTGCAATGTATAAAGGTCAAAACTTTGACACCAGATTGCTAACCCCTTTTTACCAAGGCTCGAGGACTACAAGCTTACTTAAAGGACGATTTCAAGGGCAGCGGGTTGTGGTAATTCCCAACAACACGGTTTCTGAATTAAAGTCTGAGAAACTTTCTGGGGTTTATTCAATTGAGGTCAAATTTCGTCTTTCGTGGAGGTTGAAATTAGGGCTTTATAAATTCATTAGAGTTAGGCCTAAAGTAGGATGTGGTTTCCAAGTTCCATTAACTTCTAGTGGAACTTCTTCTTTTCAGAATGCTATTGGTTGTGATGTTGATTATTGA

Protein sequence

MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSSFQNAIGCDVDY*

Homology

[Close]

BLAST of Csa3G778970 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-41
Identity = 91/188 (48.40%), Postives = 120/188 (63.83%), Query Frame = 1


Query: 8   LLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTI 67
           L + VII+  +  G + LI WLI     IKF VTDA LT+F+ T+ D  L YNL +   +
Sbjct: 40  LFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPV 99

Query: 68  RNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTV 127
           RNPNK+IG+YYD IEA A Y+G+ F T  LTPFYQG + T++L   FQGQ +V+      
Sbjct: 100 RNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQS 159

Query: 128 SELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGC-GFQVPL-TSSGTSSFQNA- 187
             L +E++SGVY+IE+KFRL  R KLG  KF R++PKV C   ++PL TS+GT++     
Sbjct: 160 RTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVF 219

Query: 188 -IGCDVDY 192
            I CD D+
Sbjct: 220 PIKCDFDF 227

[Close]

BLAST of Csa3G778970 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.3e-34
Identity = 81/191 (42.41%), Postives = 113/191 (59.16%), Query Frame = 1


Query: 5   IWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNF--TNNDTQLHYNLG 64
           I  ++ +++I  A+  G + LI+WLIF  N IKF VTDA LT+F    TNN   L YNL 
Sbjct: 44  ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNN---LRYNLD 103

Query: 65  VFFTIRNPNKQIGIYYDTIEATAMYKGQNFD-TRLLTPFYQGSRTTSLLKGRFQGQRVVV 124
           + FTIRNPN++IG+YYD IE    Y  Q F  +  ++ FYQG + T+++  +  GQ++V+
Sbjct: 104 LNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVL 163

Query: 125 IPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSSF 184
           +      +L  +  S +Y I+ K RL  R K GL K  R +PK+ C  +VPLTS+ TS F
Sbjct: 164 LDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGF 223

Query: 185 Q-NAIGCDVDY 192
                 CDVD+
Sbjct: 224 VFQPTKCDVDF 231

[Close]

BLAST of Csa3G778970 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-19
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 1


Query: 33  TNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTIRNPNKQIGIYYDTIEATAMYKGQNF 92
           +N +KF V DA LT F+  +N+  L Y+L +  +IRN    IGI+YD  EAT  Y  Q  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNNN-LQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 63

Query: 93  DTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTVSELKSEKLSGVYSIEVKFRLSWRLK 152
               +  FY GS+ T LL+  F+GQ +V++  N   + + ++ +GVY I+VK  +++R+ 
Sbjct: 64  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 123

Query: 153 LGLYKFIRVRPKVGCGFQVPLTSSGTSS 181
           +       ++P V C  ++PL    ++S
Sbjct: 124 VLHLVTWPMKPVVRCHLKIPLALGSSNS 150

[Close]

BLAST of Csa3G778970 vs. TrEMBL
Match: A0A0A0LEQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778970 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 4.7e-104
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN 60
           MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN
Sbjct: 1   MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN 60

Query: 61  LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV 120
           LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV
Sbjct: 61  LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV 120

Query: 121 VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS 180
           VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS
Sbjct: 121 VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS 180

Query: 181 FQNAIGCDVDY 192
           FQNAIGCDVDY
Sbjct: 181 FQNAIGCDVDY 191

[Close]

BLAST of Csa3G778970 vs. TrEMBL
Match: A0A0A0LGS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778960 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.6e-80
Identity = 149/191 (78.01%), Postives = 170/191 (89.01%), Query Frame = 1


Query: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63
           S+WCLLISVI+AF +SFG ++LILWL+FIT+KIKF+VTDA LTQFNFTNNDTQL YNLG+
Sbjct: 25  SLWCLLISVIVAFGVSFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNLGI 84

Query: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123
           +FTIRNPN+++GIYYDTIEATAMYK QNFDTRLLTPFYQ  +TTSLL+GRF+GQR VVI 
Sbjct: 85  YFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVVIG 144

Query: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS--- 183
           NN VSEL SEKL+GVYSI+VKFRLS RLK G+YK IRVRPKV CGFQVPL  +GTSS   
Sbjct: 145 NNKVSELNSEKLAGVYSIDVKFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSFPW 204

Query: 184 FQNAIGCDVDY 192
           FQ+AIGC VDY
Sbjct: 205 FQDAIGCHVDY 215

[Close]

BLAST of Csa3G778970 vs. TrEMBL
Match: A0A061F1P4_THECC (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_022885 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.9e-43
Identity = 96/186 (51.61%), Postives = 121/186 (65.05%), Query Frame = 1


Query: 8   LLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTI 67
           LL ++II   +  G ++LI WLIF  NK+KF VTDA LT+FNFT N+T LHYNLGV  T+
Sbjct: 42  LLFNIIITAVVVIGLAVLIFWLIFRPNKVKFHVTDASLTEFNFTTNNT-LHYNLGVNITV 101

Query: 68  RNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTV 127
           RNPNK+IGIYYD IEA A Y+ Q F+T  LTPFYQG + TS L   F GQ +VV+     
Sbjct: 102 RNPNKRIGIYYDRIEARAYYEDQRFNTLTLTPFYQGHKNTSFLNPVFSGQNLVVLGAEET 161

Query: 128 SELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTS--SFQNAI 187
           S+   EK SG+YSI+VK  L  R K+G  K  R +PK+ C  +VPL+S+  S        
Sbjct: 162 SKFNEEKTSGIYSIDVKLYLRIRFKVGKVKTGRFKPKISCDLKVPLSSADGSLAGAPETT 221

Query: 188 GCDVDY 192
            CD D+
Sbjct: 222 RCDWDF 226

[Close]

BLAST of Csa3G778970 vs. TrEMBL
Match: A0A0A0LE50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 87/185 (47.03%), Postives = 127/185 (68.65%), Query Frame = 1


Query: 10  ISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTIRN 69
           + ++IA  I  G ++LILWLIF  NK+KF+VTDA LTQFN   N  QLHYNL +  T+RN
Sbjct: 30  LKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKLTQFNLIGN--QLHYNLALNVTVRN 89

Query: 70  PNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTVSE 129
           PNK+IG+YYD+IE++ +YK Q  +T+ L PFYQG +TT+++   F GQ+++++    ++E
Sbjct: 90  PNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTTAVISCVFSGQQLLLLAGQGLTE 149

Query: 130 LKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTS---SFQNAIG 189
             +E ++GVY + V+  L  RLK G  +  + +PKV C F+VPL+S G S   S   + G
Sbjct: 150 FNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGNSVVGSVFESTG 209

Query: 190 CDVDY 192
           CD+DY
Sbjct: 210 CDIDY 212

[Close]

BLAST of Csa3G778970 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 87/188 (46.28%), Postives = 124/188 (65.96%), Query Frame = 1


Query: 7   CLL---ISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 66
           CLL   +  +IA  +  G ++L+ WL+F  NK+KFDVT A LT+FN + N  QLHY+L +
Sbjct: 36  CLLTTFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGN--QLHYDLAL 95

Query: 67  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 126
             T+RNPNK+IG+YYD IEA+  YK Q  +T+ LTPFYQG +TTS+L  +F GQ++V+  
Sbjct: 96  NLTVRNPNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFA 155

Query: 127 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSSFQN 186
            + ++E   E L+GV+ ++VK RL  RLK+G  +  + RPKV C  +VPL S+  S    
Sbjct: 156 GDKLTEFNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQ 215

Query: 187 AIGCDVDY 192
              CD D+
Sbjct: 216 TTRCDFDF 221

[Close]

BLAST of Csa3G778970 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-42
Identity = 91/188 (48.40%), Postives = 120/188 (63.83%), Query Frame = 1


Query: 8   LLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTI 67
           L + VII+  +  G + LI WLI     IKF VTDA LT+F+ T+ D  L YNL +   +
Sbjct: 40  LFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPV 99

Query: 68  RNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTV 127
           RNPNK+IG+YYD IEA A Y+G+ F T  LTPFYQG + T++L   FQGQ +V+      
Sbjct: 100 RNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQS 159

Query: 128 SELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGC-GFQVPL-TSSGTSSFQNA- 187
             L +E++SGVY+IE+KFRL  R KLG  KF R++PKV C   ++PL TS+GT++     
Sbjct: 160 RTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVF 219

Query: 188 -IGCDVDY 192
            I CD D+
Sbjct: 220 PIKCDFDF 227

[Close]

BLAST of Csa3G778970 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-35
Identity = 81/191 (42.41%), Postives = 113/191 (59.16%), Query Frame = 1


Query: 5   IWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNF--TNNDTQLHYNLG 64
           I  ++ +++I  A+  G + LI+WLIF  N IKF VTDA LT+F    TNN   L YNL 
Sbjct: 44  ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNN---LRYNLD 103

Query: 65  VFFTIRNPNKQIGIYYDTIEATAMYKGQNFD-TRLLTPFYQGSRTTSLLKGRFQGQRVVV 124
           + FTIRNPN++IG+YYD IE    Y  Q F  +  ++ FYQG + T+++  +  GQ++V+
Sbjct: 104 LNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVL 163

Query: 125 IPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSSF 184
           +      +L  +  S +Y I+ K RL  R K GL K  R +PK+ C  +VPLTS+ TS F
Sbjct: 164 LDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGF 223

Query: 185 Q-NAIGCDVDY 192
                 CDVD+
Sbjct: 224 VFQPTKCDVDF 231

[Close]

BLAST of Csa3G778970 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 141.4 bits (355), Expect = 6.0e-34
Identity = 74/189 (39.15%), Postives = 116/189 (61.38%), Query Frame = 1


Query: 5   IWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVF 64
           I  L+ +++IA A+  G + LILWLIF  N +KF V DA L +F+F  N+  LHY+L + 
Sbjct: 51  ILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNN-LHYSLDLN 110

Query: 65  FTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPN 124
           FTIRNPN+++G+YYD    +  Y  Q F +  ++ FYQG + T+++  + +GQ +VV+ +
Sbjct: 111 FTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGD 170

Query: 125 NTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGC-GFQVPL-TSSGTSSFQ 184
              ++LK ++ SG+Y I  K RLS R K    K  +++PK+ C   ++PL +S+ T  F+
Sbjct: 171 GARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFK 230

Query: 185 -NAIGCDVD 191
              + CD D
Sbjct: 231 FQPVQCDFD 238

[Close]

BLAST of Csa3G778970 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-32
Identity = 71/185 (38.38%), Postives = 103/185 (55.68%), Query Frame = 1


Query: 8   LLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTI 67
           ++ +++I   +  G   LILW I   N +KF VT+A LT+F F      LHYN+ + F+I
Sbjct: 53  IICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSI 112

Query: 68  RNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTV 127
           RNPN+++GI+YD +E    Y  Q F    +T FYQG + T+++     GQ++V++     
Sbjct: 113 RNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGR 172

Query: 128 SELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPL-TSSGTSSFQ-NAI 187
            + + ++ SGVY I+VK R   R K G      VRPK+ C  +VPL TSS    FQ +  
Sbjct: 173 RDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPT 232

Query: 188 GCDVD 191
            C VD
Sbjct: 233 KCHVD 237

[Close]

BLAST of Csa3G778970 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-20
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 1


Query: 33  TNKIKFDVTDAILTQFNFTNNDTQLHYNLGVFFTIRNPNKQIGIYYDTIEATAMYKGQNF 92
           +N +KF V DA LT F+  +N+  L Y+L +  +IRN    IGI+YD  EAT  Y  Q  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNNN-LQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 63

Query: 93  DTRLLTPFYQGSRTTSLLKGRFQGQRVVVIPNNTVSELKSEKLSGVYSIEVKFRLSWRLK 152
               +  FY GS+ T LL+  F+GQ +V++  N   + + ++ +GVY I+VK  +++R+ 
Sbjct: 64  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 123

Query: 153 LGLYKFIRVRPKVGCGFQVPLTSSGTSS 181
           +       ++P V C  ++PL    ++S
Sbjct: 124 VLHLVTWPMKPVVRCHLKIPLALGSSNS 150

[Close]

BLAST of Csa3G778970 vs. NCBI nr
Match: gi|449437862|ref|XP_004136709.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 6.7e-104
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN 60
           MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN
Sbjct: 1   MARSIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYN 60

Query: 61  LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV 120
           LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV
Sbjct: 61  LGVFFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVV 120

Query: 121 VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS 180
           VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS
Sbjct: 121 VIPNNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS 180

Query: 181 FQNAIGCDVDY 192
           FQNAIGCDVDY
Sbjct: 181 FQNAIGCDVDY 191

[Close]

BLAST of Csa3G778970 vs. NCBI nr
Match: gi|659085768|ref|XP_008443592.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 347.1 bits (889), Expect = 2.0e-92
Identity = 167/188 (88.83%), Postives = 179/188 (95.21%), Query Frame = 1


Query: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63
           S+WC LIS+I+  AISFGGS+LILWLIFITNKIKF+VTDA LTQFNFTNNDTQLHYNLGV
Sbjct: 5   SLWCFLISIIVVIAISFGGSILILWLIFITNKIKFNVTDATLTQFNFTNNDTQLHYNLGV 64

Query: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123
           FFTIRNPNKQ+GIYYDTI+ATAMYKGQNFDTRLLTPFYQGS TTSLLKGRF+GQ+VVVIP
Sbjct: 65  FFTIRNPNKQVGIYYDTIDATAMYKGQNFDTRLLTPFYQGSSTTSLLKGRFEGQQVVVIP 124

Query: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSSFQN 183
           NNTVSELKSEKLSGVYSI+V+FRLS RLK GL+KFIRVRPKVGCGFQVPL SSG SSFQN
Sbjct: 125 NNTVSELKSEKLSGVYSIDVEFRLSLRLKFGLFKFIRVRPKVGCGFQVPLNSSGASSFQN 184

Query: 184 AIGCDVDY 192
           AIGCDVDY
Sbjct: 185 AIGCDVDY 192

[Close]

BLAST of Csa3G778970 vs. NCBI nr
Match: gi|700204058|gb|KGN59191.1| (hypothetical protein Csa_3G778960 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 5.2e-80
Identity = 149/191 (78.01%), Postives = 170/191 (89.01%), Query Frame = 1


Query: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63
           S+WCLLISVI+AF +SFG ++LILWL+FIT+KIKF+VTDA LTQFNFTNNDTQL YNLG+
Sbjct: 25  SLWCLLISVIVAFGVSFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNLGI 84

Query: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123
           +FTIRNPN+++GIYYDTIEATAMYK QNFDTRLLTPFYQ  +TTSLL+GRF+GQR VVI 
Sbjct: 85  YFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVVIG 144

Query: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS--- 183
           NN VSEL SEKL+GVYSI+VKFRLS RLK G+YK IRVRPKV CGFQVPL  +GTSS   
Sbjct: 145 NNKVSELNSEKLAGVYSIDVKFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSFPW 204

Query: 184 FQNAIGCDVDY 192
           FQ+AIGC VDY
Sbjct: 205 FQDAIGCHVDY 215

[Close]

BLAST of Csa3G778970 vs. NCBI nr
Match: gi|449437860|ref|XP_004136708.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 5.2e-80
Identity = 149/191 (78.01%), Postives = 170/191 (89.01%), Query Frame = 1


Query: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63
           S+WCLLISVI+AF +SFG ++LILWL+FIT+KIKF+VTDA LTQFNFTNNDTQL YNLG+
Sbjct: 3   SLWCLLISVIVAFGVSFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNLGI 62

Query: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123
           +FTIRNPN+++GIYYDTIEATAMYK QNFDTRLLTPFYQ  +TTSLL+GRF+GQR VVI 
Sbjct: 63  YFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVVIG 122

Query: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS--- 183
           NN VSEL SEKL+GVYSI+VKFRLS RLK G+YK IRVRPKV CGFQVPL  +GTSS   
Sbjct: 123 NNKVSELNSEKLAGVYSIDVKFRLSLRLKFGIYKIIRVRPKVECGFQVPLNFTGTSSFPW 182

Query: 184 FQNAIGCDVDY 192
           FQ+AIGC VDY
Sbjct: 183 FQDAIGCHVDY 193

[Close]

BLAST of Csa3G778970 vs. NCBI nr
Match: gi|659085766|ref|XP_008443591.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 6.8e-80
Identity = 149/191 (78.01%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 4   SIWCLLISVIIAFAISFGGSLLILWLIFITNKIKFDVTDAILTQFNFTNNDTQLHYNLGV 63
           S+WCLLISVI+AF  SFG ++LILWL+FIT+KIKF+VTDA LTQFNFTNNDTQL YNLG+
Sbjct: 3   SLWCLLISVIVAFGASFGFTVLILWLVFITHKIKFNVTDATLTQFNFTNNDTQLQYNLGI 62

Query: 64  FFTIRNPNKQIGIYYDTIEATAMYKGQNFDTRLLTPFYQGSRTTSLLKGRFQGQRVVVIP 123
           +FTIRNPN+++GIYYDTIEATAMYK QNFDTRLLTPFYQ  +TTSLL+GRF+GQR VVI 
Sbjct: 63  YFTIRNPNERVGIYYDTIEATAMYKDQNFDTRLLTPFYQTPKTTSLLRGRFEGQRAVVIG 122

Query: 124 NNTVSELKSEKLSGVYSIEVKFRLSWRLKLGLYKFIRVRPKVGCGFQVPLTSSGTSS--- 183
           NN VSELKSEKL+GVYS++VKFRLS RLK G+YK +RVRPKV C FQVPL SSGTSS   
Sbjct: 123 NNKVSELKSEKLAGVYSVDVKFRLSLRLKFGIYKIVRVRPKVECRFQVPLNSSGTSSFPW 182

Query: 184 FQNAIGCDVDY 192
           FQ AIGC VDY
Sbjct: 183 FQEAIGCHVDY 193

The following BLAST results are available for this feature:

BLAST of Csa3G778970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	4.8e-41	48.40	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	4.3e-34	42.41	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
SYP24_ARATH	5.1e-19	34.46	Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1	[more]

BLAST of Csa3G778970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEQ7_CUCSA	4.7e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778970 PE=4 SV=1	[more]
A0A0A0LGS2_CUCSA	3.6e-80	78.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778960 PE=4 SV=1	[more]
A0A061F1P4_THECC	7.9e-43	51.61	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putat...	[more]
A0A0A0LE50_CUCSA	1.5e-41	47.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1	[more]
A0A0A0LGS5_CUCSA	1.9e-41	46.28	Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1	[more]

BLAST of Csa3G778970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	2.7e-42	48.40	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06320.1	2.4e-35	42.41	NDR1/HIN1-like 3	[more]
AT3G11650.1	6.0e-34	39.15	NDR1/HIN1-like 2	[more]
AT2G35460.1	1.1e-32	38.38	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G32270.1	2.9e-20	34.46	syntaxin, putative	[more]

BLAST of Csa3G778970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437862\|ref\|XP_004136709.1\|	6.7e-104	100.00	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|659085768\|ref\|XP_008443592.1\|	2.0e-92	88.83	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|700204058\|gb\|KGN59191.1\|	5.2e-80	78.01	hypothetical protein Csa_3G778960 [Cucumis sativus]	[more]
gi\|449437860\|ref\|XP_004136708.1\|	5.2e-80	78.01	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659085766\|ref\|XP_008443591.1\|	6.8e-80	78.01	PREDICTED: protein YLS9-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G778970.1	Csa3G778970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 65..165 score: 8.2
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 5..191 score: 2.1
None	No IPR available	PANTHER	PTHR31415:SF4	HARPIN-INDUCED PROTEIN-LIKE-RELATED	coord: 5..191 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G778970	MELO3C009530	Melon (DHL92) v3.5.1	cumeB223
Csa3G778970	ClCG02G022400	Watermelon (Charleston Gray)	cuwcgB213
Csa3G778970	MELO3C009530.2	Melon (DHL92) v3.6.1	cumedB207

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G778970	Watermelon (97103) v2	cuwmbB186
Csa3G778970	Watermelon (97103) v2	cuwmbB196
Csa3G778970	Wax gourd	cuwgoB238
Csa3G778970	Wax gourd	cuwgoB320
Csa3G778970	Wax gourd	cuwgoB330
Csa3G778970	Cucumber (Chinese Long) v2	cucuB016
Csa3G778970	Cucumber (Chinese Long) v2	cucuB110
Csa3G778970	Cucumber (Chinese Long) v2	cucuB114
Csa3G778970	Cucumber (Gy14) v1	cgycuB080
Csa3G778970	Cucumber (Gy14) v1	cgycuB281
Csa3G778970	Cucumber (Gy14) v1	cgycuB344
Csa3G778970	Cucurbita maxima (Rimu)	cmacuB239
Csa3G778970	Cucurbita maxima (Rimu)	cmacuB548
Csa3G778970	Cucurbita maxima (Rimu)	cmacuB816
Csa3G778970	Cucurbita maxima (Rimu)	cmacuB857
Csa3G778970	Cucurbita moschata (Rifu)	cmocuB226
Csa3G778970	Cucurbita moschata (Rifu)	cmocuB808
Csa3G778970	Cucurbita moschata (Rifu)	cmocuB844
Csa3G778970	Melon (DHL92) v3.5.1	cumeB260
Csa3G778970	Melon (DHL92) v3.5.1	cumeB234
Csa3G778970	Watermelon (Charleston Gray)	cuwcgB194
Csa3G778970	Watermelon (97103) v1	cuwmB198
Csa3G778970	Cucurbita pepo (Zucchini)	cpecuB273
Csa3G778970	Cucurbita pepo (Zucchini)	cpecuB482
Csa3G778970	Cucurbita pepo (Zucchini)	cpecuB597
Csa3G778970	Cucurbita pepo (Zucchini)	cpecuB861
Csa3G778970	Bottle gourd (USVL1VR-Ls)	culsiB162
Csa3G778970	Bottle gourd (USVL1VR-Ls)	culsiB170
Csa3G778970	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G778970	Cucumber (Gy14) v2	cgybcuB110
Csa3G778970	Cucumber (Gy14) v2	cgybcuB260
Csa3G778970	Cucumber (Gy14) v2	cgybcuB255
Csa3G778970	Melon (DHL92) v3.6.1	cumedB222
Csa3G778970	Melon (DHL92) v3.6.1	cumedB250
Csa3G778970	Silver-seed gourd	carcuB0276
Csa3G778970	Silver-seed gourd	carcuB0444
Csa3G778970	Silver-seed gourd	carcuB0700
Csa3G778970	Silver-seed gourd	carcuB0822