Csa3G777020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G777020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 29849592 .. 29850294 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACAAAAAGAAAAAGAATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGTCAAGCTAACTTTTTTGTTTTCTCATCGACAAAGATCGATAAGTTTGAATAACACTAACAGTGATATTTTAAGTGAGAATGTAATGGAATAAGAGAAAAATAATAATGTGTAACACATATATATTTCAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAATTCGTTTAATTTTCTCTCAACTTTGCTCGATCCTCCCTCACTCTTAATTAATCATCTTTTTTTTTTCTTCTCTTTTATGTTTTGTTTGATGTGTGTTGTTTAATGGGAAAATGGTTAAAAAGTTTATGGTGAGAAAATGGTTTTTCTTTTGTTAGAATATCAAAAGAAAGAGAGATTTTTTTTATTAATTTTTGTTTTGATTTATATATATATATGTTGTTACATAATTTTATGCTATTAAATATATATAAACCCTACTTGA

mRNA sequence

ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

Coding sequence (CDS)

ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCCGTTTCCTCTCAAGTTGCTACATCTTTGGAAGCTAAGGAACATGAGAAGAGAAAAGCAGCGGAAGACGAGCGGAAGAGAGCAAAGAAGAAGAAGGAAGCAATGCAAACATTGAAGACAACGTTCATCGTCTCCGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

Protein sequence

MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN*

Homology

[Close]

BLAST of Csa3G777020 vs. TrEMBL
Match: A0A0A0LBF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 97
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of Csa3G777020 vs. TrEMBL
Match: A0A068V4I4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043165001 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 8  GEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQ 67
          G+ FPA D E+ELNPG+NK+ EVDPVSS+VATSL+ KE       E   K+  +KK+A+ 
Sbjct: 5  GDAFPAADAEKELNPGENKNFEVDPVSSEVATSLQIKEQ-----IEAAEKKENEKKDALD 64

Query: 68 TLKTTFIVSGIIAAVAVAAFAIVKKLRE 96
            K+  +VSGI+ A+A A FAIVKKL+E
Sbjct: 65 KFKSAILVSGIVVALAGAVFAIVKKLKE 87

[Close]

BLAST of Csa3G777020 vs. TrEMBL
Match: B9SWF8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0292960 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 7  DGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAM 66
          D   FPA D+E+ELNPG NK+ EVD VSS +A S E KE E    A+ ++K+ ++K++ M
Sbjct: 8  DASTFPAADLEKELNPGQNKNFEVDTVSSDIAASKEIKERE----ADTQKKKEREKRDTM 67

Query: 67 QTLKTTFIVSGIIAAVAVAAFAIVK 92
          QTLKTT +VS +IAAVA AAFAI K
Sbjct: 68 QTLKTTILVSAVIAAVAGAAFAITK 88

[Close]

BLAST of Csa3G777020 vs. TrEMBL
Match: A0A0B2P3I8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002237 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 11 FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQTLK 70
          FP  DV+ ELNPG N  VEVDP SS++A + ++KEH + K    ++KR +KKK+A+QTLK
Sbjct: 12 FPPADVDGELNPGHNVRVEVDPESSEIAATKKSKEHAEAK----QKKRERKKKDALQTLK 71

Query: 71 TTFIVSGIIAAVAVAAFAIVKKL 94
          +  IVSGII AVA  AFAI KKL
Sbjct: 72 SAVIVSGIIVAVAGVAFAITKKL 90

[Close]

BLAST of Csa3G777020 vs. TrEMBL
Match: K7MZ93_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 11 FPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQTLK 70
          FP  DV+ ELNPG N  VEVDP SS++A + ++KEH + K    ++KR +KKK+A+QTLK
Sbjct: 12 FPPADVDGELNPGHNVRVEVDPESSEIAATKKSKEHAEAK----QKKRERKKKDALQTLK 71

Query: 71 TTFIVSGIIAAVAVAAFAIVKKL 94
          +  IVSGII AVA  AFAI KKL
Sbjct: 72 SAVIVSGIIVAVAGVAFAITKKL 90

[Close]

BLAST of Csa3G777020 vs. TAIR10
Match: AT3G52620.1 (AT3G52620.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 7  DGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAM 66
          D   FP  D E ELNPG NK+ EVDPVSS++A+       EK +   ++R+ AK K++  
Sbjct: 4  DTTTFPEGDAEAELNPGQNKNFEVDPVSSEIAS-------EKVQKIVEKRENAKAKRDGA 63

Query: 67 QTLKTTFIVSGIIAAVAVAAFAIVKKLREN 97
          +TLK T IVS +I AVA AAFAI KKL+EN
Sbjct: 64 RTLKNTIIVSAVIVAVAGAAFAITKKLKEN 86

[Close]

BLAST of Csa3G777020 vs. NCBI nr
Match: gi|778684327|ref|XP_011652018.1| (PREDICTED: uncharacterized protein LOC105434975 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 97
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of Csa3G777020 vs. NCBI nr
Match: gi|659084374|ref|XP_008442853.1| (PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAK 60
          MGSQGRDGEGFPAVDVERELNPGDNKHVEVDP+SSQVATSLEAKEHEKR AAE+ERKRAK
Sbjct: 1  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRTAAEEERKRAK 60

Query: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 97
          KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Sbjct: 61 KKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of Csa3G777020 vs. NCBI nr
Match: gi|661881049|emb|CDP15434.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-17
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 8  GEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQ 67
          G+ FPA D E+ELNPG+NK+ EVDPVSS+VATSL+ KE       E   K+  +KK+A+ 
Sbjct: 5  GDAFPAADAEKELNPGENKNFEVDPVSSEVATSLQIKEQ-----IEAAEKKENEKKDALD 64

Query: 68 TLKTTFIVSGIIAAVAVAAFAIVKKLRE 96
            K+  +VSGI+ A+A A FAIVKKL+E
Sbjct: 65 KFKSAILVSGIVVALAGAVFAIVKKLKE 87

[Close]

BLAST of Csa3G777020 vs. NCBI nr
Match: gi|255578949|ref|XP_002530327.1| (PREDICTED: uncharacterized protein LOC8263184 [Ricinus communis])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 7  DGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAM 66
          D   FPA D+E+ELNPG NK+ EVD VSS +A S E KE E    A+ ++K+ ++K++ M
Sbjct: 8  DASTFPAADLEKELNPGQNKNFEVDTVSSDIAASKEIKERE----ADTQKKKEREKRDTM 67

Query: 67 QTLKTTFIVSGIIAAVAVAAFAIVK 92
          QTLKTT +VS +IAAVA AAFAI K
Sbjct: 68 QTLKTTILVSAVIAAVAGAAFAITK 88

[Close]

BLAST of Csa3G777020 vs. NCBI nr
Match: gi|1009160989|ref|XP_015898652.1| (PREDICTED: uncharacterized protein LOC107432097 [Ziziphus jujuba])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 7  DGEGFPAVDVERELNPGDNKH-VEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEA 66
          D   FP  DV+ ELNP   K  +EVDP+SS+VATSLE KE   R  AE+++K   KK +A
Sbjct: 12 DSSDFPPADVDSELNPPTKKKGLEVDPISSEVATSLEIKE---RVEAEEKQKARGKKDDA 71

Query: 67 MQTLKTTFIVSGIIAAVAVAAFAIVKKLRE 96
          +QTLKTT IVSG+I AVA A  AI KKLRE
Sbjct: 72 LQTLKTTIIVSGVILAVAGAVIAITKKLRE 98

The following BLAST results are available for this feature:

BLAST of Csa3G777020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF7_CUCSA	1.2e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777020 PE=4 SV=1	[more]
A0A068V4I4_COFCA	6.4e-17	54.55	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043165001 PE=4 SV=1	[more]
B9SWF8_RICCO	1.4e-16	56.47	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0292960 PE=4 SV=1	[more]
A0A0B2P3I8_GLYSO	5.4e-16	57.83	Uncharacterized protein OS=Glycine soja GN=glysoja_002237 PE=4 SV=1	[more]
K7MZ93_SOYBN	5.4e-16	57.83	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Csa3G777020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52620.1	1.5e-17	52.22	unknown protein	[more]

BLAST of Csa3G777020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684327\|ref\|XP_011652018.1\|	1.8e-44	100.00	PREDICTED: uncharacterized protein LOC105434975 [Cucumis sativus]	[more]
gi\|659084374\|ref\|XP_008442853.1\|	3.4e-43	96.88	PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo]	[more]
gi\|661881049\|emb\|CDP15434.1\|	9.2e-17	54.55	unnamed protein product [Coffea canephora]	[more]
gi\|255578949\|ref\|XP_002530327.1\|	2.0e-16	56.47	PREDICTED: uncharacterized protein LOC8263184 [Ricinus communis]	[more]
gi\|1009160989\|ref\|XP_015898652.1\|	6.0e-16	58.89	PREDICTED: uncharacterized protein LOC107432097 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU089149	cucumber EST collection version 3.0	transcribed_cluster
CU091774	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G777020.1	Csa3G777020.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU091774	CU091774	transcribed_cluster
CU089149	CU089149	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 42..72 scor
None	No IPR available	PANTHER	PTHR37741	FAMILY NOT NAMED	coord: 1..96 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G777020	Cla017681	Watermelon (97103) v1	cuwmB198
Csa3G777020	MELO3C009481	Melon (DHL92) v3.5.1	cumeB223
Csa3G777020	ClCG10G018870	Watermelon (Charleston Gray)	cuwcgB194
Csa3G777020	Lsi03G018820	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G777020	MELO3C009481.2	Melon (DHL92) v3.6.1	cumedB207
Csa3G777020	Cla97C10G201890	Watermelon (97103) v2	cuwmbB186
Csa3G777020	CSPI03G35010	Wild cucumber (PI 183967)	cpicuB120
Csa3G777020	CmaCh06G004810	Cucurbita maxima (Rimu)	cmacuB816
Csa3G777020	CmoCh06G004830	Cucurbita moschata (Rifu)	cmocuB808
Csa3G777020	CsGy3G032460	Cucumber (Gy14) v2	cgybcuB110
Csa3G777020	Carg03663	Silver-seed gourd	carcuB0276

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G777020	Melon (DHL92) v3.6.1	cumedB250
Csa3G777020	Silver-seed gourd	carcuB0164
Csa3G777020	Silver-seed gourd	carcuB0265
Csa3G777020	Silver-seed gourd	carcuB0444
Csa3G777020	Silver-seed gourd	carcuB0637
Csa3G777020	Silver-seed gourd	carcuB0822
Csa3G777020	Watermelon (97103) v2	cuwmbB203
Csa3G777020	Watermelon (97103) v2	cuwmbB196
Csa3G777020	Wax gourd	cuwgoB224
Csa3G777020	Wax gourd	cuwgoB330
Csa3G777020	Cucumber (Chinese Long) v2	cucuB110
Csa3G777020	Cucumber (Gy14) v1	cgycuB080
Csa3G777020	Cucumber (Gy14) v1	cgycuB344
Csa3G777020	Cucurbita maxima (Rimu)	cmacuB239
Csa3G777020	Cucurbita maxima (Rimu)	cmacuB659
Csa3G777020	Cucurbita maxima (Rimu)	cmacuB857
Csa3G777020	Cucurbita moschata (Rifu)	cmocuB226
Csa3G777020	Cucurbita moschata (Rifu)	cmocuB648
Csa3G777020	Cucurbita moschata (Rifu)	cmocuB844
Csa3G777020	Melon (DHL92) v3.5.1	cumeB260
Csa3G777020	Watermelon (Charleston Gray)	cuwcgB213
Csa3G777020	Watermelon (Charleston Gray)	cuwcgB221
Csa3G777020	Watermelon (97103) v1	cuwmB266
Csa3G777020	Cucurbita pepo (Zucchini)	cpecuB063
Csa3G777020	Cucurbita pepo (Zucchini)	cpecuB273
Csa3G777020	Cucurbita pepo (Zucchini)	cpecuB483
Csa3G777020	Cucurbita pepo (Zucchini)	cpecuB597
Csa3G777020	Cucurbita pepo (Zucchini)	cpecuB861
Csa3G777020	Bottle gourd (USVL1VR-Ls)	culsiB162
Csa3G777020	Bottle gourd (USVL1VR-Ls)	culsiB170
Csa3G777020	Cucumber (Gy14) v2	cgybcuB255