Csa3G760000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G760000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SOSS complex subunit B1
Location	Chr3 : 29320640 .. 29320840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATACCTCTCAAGGATTCGGTGCCAGCAGCCCAGAACAAAGTGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGGCAGCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCCCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA

mRNA sequence

ATGATGATACCTCTCAAGGATTCGGTGCCAGCAGCCCAGAACAAAGTGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGGCAGCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCCCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA

Coding sequence (CDS)

ATGATGATACCTCTCAAGGATTCGGTGCCAGCAGCCCAGAACAAAGTGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGGCAGCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCCCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA

Protein sequence

MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR*

Homology

[Close]

BLAST of Csa3G760000 vs. TrEMBL
Match: A0A0A0LDX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G760000 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR 60
          MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR
Sbjct: 1  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR 60

Query: 61 IFPPIR 67
          IFPPIR
Sbjct: 61 IFPPIR 66

[Close]

BLAST of Csa3G760000 vs. TrEMBL
Match: A0A0A0LW03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR 67
           A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Sbjct: 85  AGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Csa3G760000 vs. TrEMBL
Match: A0A0A0LW03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 33.1 bits (74), Expect = 1.6e+02
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1


Query: 1  MMIPLKDSVPAAQNKVKIE 20
          MMIPLKD VPAAQNKV  +
Sbjct: 1  MMIPLKDLVPAAQNKVNTQ 19

HSP 2 Score: 83.6 bits (205), Expect = 1.0e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EKVG+F M FVETPN+SEI WVP   NSNKYVK SV+SPYSRIFPPI
Sbjct: 92  AGRRGKVEKVGDFTMEFVETPNLSEIKWVPDPNNSNKYVKHSVISPYSRIFPPI 145

[Close]

BLAST of Csa3G760000 vs. TrEMBL
Match: A0A061DXZ7_THECC (Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_004501 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EKVGEF M FVETPNMSEI WVP   N NKYV+ SV+SP+SRIFPPI
Sbjct: 83  AGKRGKVEKVGEFTMEFVETPNMSEIKWVPDPNNFNKYVQHSVISPHSRIFPPI 136

[Close]

BLAST of Csa3G760000 vs. TrEMBL
Match: A0A0D2SY58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007300 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-12
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EKVG F M FVETPN+SE+ WVP   NSNKYV+ SV+SP+SRIFPPI
Sbjct: 83  AGRRGKVEKVGNFIMEFVETPNLSEVKWVPDPNNSNKYVQHSVISPHSRIFPPI 136

[Close]

BLAST of Csa3G760000 vs. TAIR10
Match: AT5G63690.1 (AT5G63690.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-12
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EK+GEF + FVETPN+SEI W+P   N  +Y++  V+S YSRIFPP+
Sbjct: 85  AGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPKRYIQSGVVSAYSRIFPPL 138

[Close]

BLAST of Csa3G760000 vs. NCBI nr
Match: gi|700203946|gb|KGN59079.1| (hypothetical protein Csa_3G760000 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR 60
          MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR
Sbjct: 1  MMIPLKDSVPAAQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSR 60

Query: 61 IFPPIR 67
          IFPPIR
Sbjct: 61 IFPPIR 66

[Close]

BLAST of Csa3G760000 vs. NCBI nr
Match: gi|449435653|ref|XP_004135609.1| (PREDICTED: SOSS complex subunit B homolog [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR 67
           A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Sbjct: 85  AGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Csa3G760000 vs. NCBI nr
Match: gi|449435653|ref|XP_004135609.1| (PREDICTED: SOSS complex subunit B homolog [Cucumis sativus])

HSP 1 Score: 33.1 bits (74), Expect = 2.3e+02
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1


Query: 1  MMIPLKDSVPAAQNKVKIE 20
          MMIPLKD VPAAQNKV  +
Sbjct: 1  MMIPLKDLVPAAQNKVNTQ 19

HSP 2 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPIR 67
           A  + KIEKVGEFKMVFVETPNMSEIHWVP +INSNKYVKESVLSPYSRIFPPIR
Sbjct: 86  AGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of Csa3G760000 vs. NCBI nr
Match: gi|659099487|ref|XP_008450623.1| (PREDICTED: SOSS complex subunit B homolog [Cucumis melo])

HSP 1 Score: 33.1 bits (74), Expect = 2.3e+02
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1


Query: 1  MMIPLKDSVPAAQNKVKIE 20
          MMIPLKD VPAAQNKV  +
Sbjct: 2  MMIPLKDLVPAAQNKVNTQ 20

HSP 2 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EKVG+F M FVETPN+SEI WVP   NSNKYVK SV+SPYSRIFPPI
Sbjct: 92  AGRRGKVEKVGDFTMEFVETPNLSEIKWVPDPNNSNKYVKHSVISPYSRIFPPI 145

[Close]

BLAST of Csa3G760000 vs. NCBI nr
Match: gi|590718070|ref|XP_007050740.1| (Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 12  AQNKVKIEKVGEFKMVFVETPNMSEIHWVPGSINSNKYVKESVLSPYSRIFPPI 66
           A  + K+EKVGEF M FVETPNMSEI WVP   N NKYV+ SV+SP+SRIFPPI
Sbjct: 83  AGKRGKVEKVGEFTMEFVETPNMSEIKWVPDPNNFNKYVQHSVISPHSRIFPPI 136

The following BLAST results are available for this feature:

BLAST of Csa3G760000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDX2_CUCSA	1.3e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G760000 PE=4 SV=1	[more]
A0A0A0LW03_CUCSA	2.1e-19	89.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1	[more]
A0A0A0LW03_CUCSA	1.6e+02	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569370 PE=4 SV=1	[more]
A0A061DXZ7_THECC	1.1e-12	70.37	Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A0D2SY58_GOSRA	4.3e-12	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007300 PE=4 SV=1	[more]

BLAST of Csa3G760000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63690.1	1.7e-12	53.70	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Csa3G760000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203946\|gb\|KGN59079.1\|	1.9e-29	100.00	hypothetical protein Csa_3G760000 [Cucumis sativus]	[more]
gi\|449435653\|ref\|XP_004135609.1\|	3.0e-19	89.09	PREDICTED: SOSS complex subunit B homolog [Cucumis sativus]	[more]
gi\|449435653\|ref\|XP_004135609.1\|	2.3e+02	78.95	PREDICTED: SOSS complex subunit B homolog [Cucumis sativus]	[more]
gi\|659099487\|ref\|XP_008450623.1\|	2.3e+02	78.95	PREDICTED: SOSS complex subunit B homolog [Cucumis melo]	[more]
gi\|590718070\|ref\|XP_007050740.1\|	1.6e-12	70.37	Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G760000.1	Csa3G760000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G760000	CSPI03G34360	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G760000	Melon (DHL92) v3.5.1	cumeB193
Csa3G760000	Watermelon (Charleston Gray)	cuwcgB177
Csa3G760000	Watermelon (97103) v1	cuwmB182
Csa3G760000	Cucurbita pepo (Zucchini)	cpecuB551
Csa3G760000	Cucurbita pepo (Zucchini)	cpecuB778
Csa3G760000	Bottle gourd (USVL1VR-Ls)	culsiB181
Csa3G760000	Cucumber (Gy14) v2	cgybcuB311
Csa3G760000	Melon (DHL92) v3.6.1	cumedB179
Csa3G760000	Silver-seed gourd	carcuB0897
Csa3G760000	Silver-seed gourd	carcuB0919
Csa3G760000	Watermelon (97103) v2	cuwmbB255
Csa3G760000	Wax gourd	cuwgoB343
Csa3G760000	Cucumber (Gy14) v1	cgycuB400
Csa3G760000	Cucurbita maxima (Rimu)	cmacuB016
Csa3G760000	Cucurbita maxima (Rimu)	cmacuB459
Csa3G760000	Cucurbita moschata (Rifu)	cmocuB007
Csa3G760000	Cucurbita moschata (Rifu)	cmocuB446