Csa3G728080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G728080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR002885 (Pentatricopeptide repeat)
Location	Chr3 : 27223497 .. 27223949 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGCTTGTGTAGGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCAGAGGCACTCGCAAATTTGCATCATATGATTGAAAAAGGCTACGCTCCAACACCGATTATCAGTGACGTTATTGTTCAAACACTGTCACAGGGGAAGCGTCAACGAAACATTCTGTGTTTTGGGGCTTGGAATCCCTTTCACAGCAATTTCTTTCAGTGCTTGTAATGAGCTTAATACACAGGGAATATATTTCAGTGCTTGTAATGTATGA

mRNA sequence

ATGGATGGCTTGTGTAGGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGGGAAGCGTCAACGAAACATTCTGTGTTTTGGGGCTTGGAATCCCTTTCACAGCAATTTCTTTCAGTGCTTGTAATGAGCTTAATACACAGGGAATATATTTCAGTGCTTGTAATGTATGA

Coding sequence (CDS)

ATGGATGGCTTGTGTAGGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGGGAAGCGTCAACGAAACATTCTGTGTTTTGGGGCTTGGAATCCCTTTCACAGCAATTTCTTTCAGTGCTTGTAATGAGCTTAATACACAGGGAATATATTTCAGTGCTTGTAATGTATGA

Protein sequence

MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV*

Homology

[Close]

BLAST of Csa3G728080 vs. TrEMBL
Match: A0A0A0LF40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G728080 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH
Sbjct: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60

Query: 61  QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV 102
           QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV
Sbjct: 61  QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV 101

[Close]

BLAST of Csa3G728080 vs. TrEMBL
Match: A0A067JGF6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00655 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-09
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFT 41
           MDG C+VGR+DEAMELLNEA E GLKP++VTFNTLF+GF+
Sbjct: 188 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFS 227

[Close]

BLAST of Csa3G728080 vs. TrEMBL
Match: A0A067JGF6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00655 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-04
Identity = 40/126 (31.75%), Postives = 49/126 (38.89%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVT----------------------------- 60
           MDG C+VGR+DEAMELLNEA E GLKP++VT                             
Sbjct: 188 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFSREGRPLEGIGVLKKMKQINC 247

Query: 61  ---------------------------FNTLFNGF--------TFIRALCRTSLKEKDVL 63
                                         + NGF          +R LCR  LKE D+L
Sbjct: 248 RPDYISYSTLLHGLLMWRKIRTALRIYKEMVRNGFEVDERLMNNLLRGLCRKFLKENDLL 307

HSP 2 Score: 39.3 bits (90), Expect = 3.4e+00
Identity = 21/74 (28.38%), Postives = 36/74 (48.65%), Query Frame = 1


Query: 5   CRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRAL-----CRTSLKEKDVLEDA 64
           C++   DEA  +L+   ENGL P++ TF TL N F     +         +K+  +  D 
Sbjct: 122 CKIENVDEARRVLDHMVENGLHPNLATFTTLINSFCKKGRVEEAFELMEDIKKSSIDADV 181

Query: 65  HQLGSVNETFCVLG 74
           +   ++ + FC +G
Sbjct: 182 YTYTALMDGFCKVG 195

HSP 3 Score: 33.9 bits (76), Expect = 1.4e+02
Identity = 16/65 (24.62%), Postives = 36/65 (55.38%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLED 60
           ++  C+ GR +EA EL+ + +++ +   V T+  L +GF      C+    ++  ++L +
Sbjct: 153 INSFCKKGRVEEAFELMEDIKKSSIDADVYTYTALMDGF------CKVGRTDEAMELLNE 211

Query: 61  AHQLG 64
           A ++G
Sbjct: 213 AMEIG 211

HSP 4 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           MDG C+VGRSDEA+ELLNEA E GL P VVTFNTLFNG+
Sbjct: 371 MDGFCKVGRSDEAVELLNEAFEMGLTPDVVTFNTLFNGY 409

[Close]

BLAST of Csa3G728080 vs. TrEMBL
Match: W9SS02_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006096 PE=4 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-01
Identity = 20/65 (30.77%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLED 60
           + GLC VGR +EA E+L + +E  LKP + ++  + +GF      C+    ++  ++L +
Sbjct: 336 LKGLCYVGRVEEAFEMLMKMKEEDLKPDIYSYTAVMDGF------CKVGRSDEAVELLNE 394

Query: 61  AHQLG 64
           A ++G
Sbjct: 396 AFEMG 394

HSP 2 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           MDG C+VGRS+EA+ELLNEA E GLKPS+VT+NT+FNG+
Sbjct: 142 MDGFCKVGRSNEALELLNEAIEMGLKPSIVTYNTIFNGY 180

[Close]

BLAST of Csa3G728080 vs. TrEMBL
Match: A0A118K1R3_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018448 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-04
Identity = 40/126 (31.75%), Postives = 53/126 (42.06%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVT----------------------------- 60
           MDG C+VGRS+EA+ELLNEA E GLKPS+VT                             
Sbjct: 142 MDGFCKVGRSNEALELLNEAIEMGLKPSIVTYNTIFNGYFKEGRPKDGFGLLKQMKERNC 201

Query: 61  --------------------------FNTLFN-GF--------TFIRALCRTSLKEKDVL 63
                                     +N + + GF        T +R +CR S KEK++L
Sbjct: 202 NPDYISYSTLLHGLLQWGEIGDGLRVYNQMLDMGFDIDGRMMNTLLRGICRRSRKEKELL 261

HSP 2 Score: 34.7 bits (78), Expect = 8.3e+01
Identity = 16/40 (40.00%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEEN-GLKPSVVTFNTLFNGF 40
           + GLC VG+ +EA ELL + +++  L+P V +F  + +GF
Sbjct: 106 LKGLCYVGKVEEAYELLTKIKKSWNLQPDVYSFTAVMDGF 145

HSP 3 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           MDG C+VGRS+EAMELLNEA E G+ P+VVTFNTLFNG+
Sbjct: 191 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGY 229

[Close]

BLAST of Csa3G728080 vs. TAIR10
Match: AT1G06710.1 (AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI 43
           +DGLC+VG++DEA +L+   EE G +P+VVT+  + +GF  I
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI 792

HSP 2 Score: 38.5 bits (88), Expect = 2.9e-03
Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           +DGLC+VG+ DEA E+  E  E+G   ++ T+++L + +
Sbjct: 681 IDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719

HSP 3 Score: 33.9 bits (76), Expect = 7.1e-02
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNG 39
           + GLC     +EAM+ LN        P+VVT++TL  G
Sbjct: 309 ISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 346

HSP 4 Score: 31.6 bits (70), Expect = 3.5e-01
Identity = 12/38 (31.58%), Postives = 21/38 (55.26%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNG 39
           +DG C+  R +EA +LL+     G +P+ + ++ L +G
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 683

[Close]

BLAST of Csa3G728080 vs. TAIR10
Match: AT5G55840.1 (AT5G55840.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.8e-06
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           +DGLC+ G  DEA+ LLNE  ++G+ P +VT++ L NGF
Sbjct: 450 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 488

HSP 2 Score: 33.1 bits (74), Expect = 1.2e-01
Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = 1


Query: 4   LCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFT 41
           LCR  R  +   LL +  +  + P+ VT+NTL NGF+
Sbjct: 313 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 349

[Close]

BLAST of Csa3G728080 vs. TAIR10
Match: AT3G07290.1 (AT3G07290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.2e-06
Identity = 30/88 (34.09%), Postives = 45/88 (51.14%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           M+GLCRVG+  +A+ LL    +NGL P +V++N L +G      LCR     +  +  A+
Sbjct: 413 MEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG------LCR-----EGHMNTAY 472

Query: 61  QLGSVNETFCVLGLGIPFTAISFSACNE 89
           +L S    F +    + FTAI  + C +
Sbjct: 473 KLLSSMNCFDIEPDCLTFTAIINAFCKQ 489

HSP 2 Score: 38.9 bits (89), Expect = 2.2e-03
Identity = 16/39 (41.03%), Postives = 25/39 (64.10%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           +DGLCR G+ +EA  +  +  ++ + PSV+T+N L NG+
Sbjct: 343 IDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGY 381

HSP 3 Score: 38.5 bits (88), Expect = 2.9e-03
Identity = 18/62 (29.03%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           ++GLC+ GR +EA +LL+  +++G+ P+ VT+  +  G+     L R     + ++E  +
Sbjct: 623 INGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY 682

Query: 61  QL 63
           +L
Sbjct: 683 EL 684

HSP 4 Score: 37.4 bits (85), Expect = 6.5e-03
Identity = 21/51 (41.18%), Postives = 26/51 (50.98%), Query Frame = 1


Query: 3   GLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK 54
           GLC VGR +EA  L ++  E G +PS  T+  L      I+ALC   L +K
Sbjct: 275 GLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL------IKALCDRGLIDK 319

HSP 5 Score: 29.6 bits (65), Expect = 1.3e+00
Identity = 17/44 (38.64%), Postives = 20/44 (45.45%), Query Frame = 1


Query: 4   LCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCR 48
           LC  G  D+A  L +E    G KP+V T+  L +G      LCR
Sbjct: 311 LCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDG------LCR 348

[Close]

BLAST of Csa3G728080 vs. TAIR10
Match: AT1G05670.1 (AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.2e-06
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           MD  C+ G  D+A E+L E    GL+P++VTFN L NGF
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571

HSP 2 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDV 56
           +DGLC+ G  D A ELL+E  + GL+P++ T+N++ NG      LC++   E+ V
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG------LCKSGNIEEAV 511

HSP 3 Score: 36.6 bits (83), Expect = 1.1e-02
Identity = 24/86 (27.91%), Postives = 43/86 (50.00%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLED 60
           ++GLC+ G  +EA++L+ E E  GL    VT+ TL +      A C++   +K  ++L++
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD------AYCKSGEMDKAQEILKE 557

Query: 61  AHQLGSVNETFCVLGLGIPFTAISFS 85
                       +LG G+  T ++F+
Sbjct: 558 ------------MLGKGLQPTIVTFN 565

HSP 4 Score: 35.4 bits (80), Expect = 2.5e-02
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 1


Query: 4   LCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFT---FIRALCR--TSLKEKDVLED 63
           LCR+ +  EA E  +E    G+ P  V + TL +GF     IRA  +    +  +D+  D
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385

Query: 64  AHQLGSVNETFCVLG 74
                ++   FC +G
Sbjct: 386 VLTYTAIISGFCQIG 400

HSP 5 Score: 34.7 bits (78), Expect = 4.2e-02
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           + G C++G   EA +L +E    GL+P  VTF  L NG+
Sbjct: 393 ISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431

HSP 6 Score: 33.9 bits (76), Expect = 7.1e-02
Identity = 20/72 (27.78%), Postives = 35/72 (48.61%), Query Frame = 1


Query: 4   LCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRT-----SLKEKDVLED 63
           +C++GR  EA  LL   E  G  P V++++T+ NG+     L +       +K K +  +
Sbjct: 256 VCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315

Query: 64  AHQLGSVNETFC 71
           ++  GS+    C
Sbjct: 316 SYIYGSIIGLLC 327

[Close]

BLAST of Csa3G728080 vs. NCBI nr
Match: gi|700203558|gb|KGN58691.1| (hypothetical protein Csa_3G728080 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH
Sbjct: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60

Query: 61  QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV 102
           QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV
Sbjct: 61  QLGSVNETFCVLGLGIPFTAISFSACNELNTQGIYFSACNV 101

[Close]

BLAST of Csa3G728080 vs. NCBI nr
Match: gi|802778079|ref|XP_012091050.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFT 41
           MDG C+VGR+DEAMELLNEA E GLKP++VTFNTLF+GF+
Sbjct: 240 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFS 279

[Close]

BLAST of Csa3G728080 vs. NCBI nr
Match: gi|802778079|ref|XP_012091050.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas])

HSP 1 Score: 52.0 bits (123), Expect = 7.2e-04
Identity = 40/126 (31.75%), Postives = 49/126 (38.89%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVT----------------------------- 60
           MDG C+VGR+DEAMELLNEA E GLKP++VT                             
Sbjct: 240 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFSREGRPLEGIGVLKKMKQINC 299

Query: 61  ---------------------------FNTLFNGF--------TFIRALCRTSLKEKDVL 63
                                         + NGF          +R LCR  LKE D+L
Sbjct: 300 RPDYISYSTLLHGLLMWRKIRTALRIYKEMVRNGFEVDERLMNNLLRGLCRKFLKENDLL 359

HSP 2 Score: 39.3 bits (90), Expect = 4.8e+00
Identity = 21/74 (28.38%), Postives = 36/74 (48.65%), Query Frame = 1


Query: 5   CRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRAL-----CRTSLKEKDVLEDA 64
           C++   DEA  +L+   ENGL P++ TF TL N F     +         +K+  +  D 
Sbjct: 174 CKIENVDEARRVLDHMVENGLHPNLATFTTLINSFCKKGRVEEAFELMEDIKKSSIDADV 233

Query: 65  HQLGSVNETFCVLG 74
           +   ++ + FC +G
Sbjct: 234 YTYTALMDGFCKVG 247

HSP 3 Score: 33.9 bits (76), Expect = 2.0e+02
Identity = 16/65 (24.62%), Postives = 36/65 (55.38%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLED 60
           ++  C+ GR +EA EL+ + +++ +   V T+  L +GF      C+    ++  ++L +
Sbjct: 205 INSFCKKGRVEEAFELMEDIKKSSIDADVYTYTALMDGF------CKVGRTDEAMELLNE 263

Query: 61  AHQLG 64
           A ++G
Sbjct: 265 AMEIG 263

HSP 4 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFT 41
           MDG C+VGR+DEAMELLNEA E GLKP++VTFNTLF+GF+
Sbjct: 188 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFS 227

[Close]

BLAST of Csa3G728080 vs. NCBI nr
Match: gi|643705251|gb|KDP21868.1| (hypothetical protein JCGZ_00655 [Jatropha curcas])

HSP 1 Score: 52.0 bits (123), Expect = 7.2e-04
Identity = 40/126 (31.75%), Postives = 49/126 (38.89%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVT----------------------------- 60
           MDG C+VGR+DEAMELLNEA E GLKP++VT                             
Sbjct: 188 MDGFCKVGRTDEAMELLNEAMEIGLKPNIVTFNTLFDGFSREGRPLEGIGVLKKMKQINC 247

Query: 61  ---------------------------FNTLFNGF--------TFIRALCRTSLKEKDVL 63
                                         + NGF          +R LCR  LKE D+L
Sbjct: 248 RPDYISYSTLLHGLLMWRKIRTALRIYKEMVRNGFEVDERLMNNLLRGLCRKFLKENDLL 307

HSP 2 Score: 39.3 bits (90), Expect = 4.8e+00
Identity = 21/74 (28.38%), Postives = 36/74 (48.65%), Query Frame = 1


Query: 5   CRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRAL-----CRTSLKEKDVLEDA 64
           C++   DEA  +L+   ENGL P++ TF TL N F     +         +K+  +  D 
Sbjct: 122 CKIENVDEARRVLDHMVENGLHPNLATFTTLINSFCKKGRVEEAFELMEDIKKSSIDADV 181

Query: 65  HQLGSVNETFCVLG 74
           +   ++ + FC +G
Sbjct: 182 YTYTALMDGFCKVG 195

HSP 3 Score: 33.9 bits (76), Expect = 2.0e+02
Identity = 16/65 (24.62%), Postives = 36/65 (55.38%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLED 60
           ++  C+ GR +EA EL+ + +++ +   V T+  L +GF      C+    ++  ++L +
Sbjct: 153 INSFCKKGRVEEAFELMEDIKKSSIDADVYTYTALMDGF------CKVGRTDEAMELLNE 211

Query: 61  AHQLG 64
           A ++G
Sbjct: 213 AMEIG 211

HSP 4 Score: 68.6 bits (166), Expect = 7.4e-09
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           MDG C+VGRSDEAMELL EA E G+ P+VVTFNTLFNG+           KE   LE  H
Sbjct: 287 MDGFCKVGRSDEAMELLVEALEMGMTPNVVTFNTLFNGY----------CKEGRPLEGIH 346

Query: 61  QLGSVNETFCV 72
            L ++ E  C+
Sbjct: 347 LLKNMKERNCM 347

[Close]

BLAST of Csa3G728080 vs. NCBI nr
Match: gi|731398659|ref|XP_010653334.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Vitis vinifera])

HSP 1 Score: 35.0 bits (79), Expect = 9.1e+01
Identity = 13/39 (33.33%), Postives = 26/39 (66.67%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           + GLC VGR ++A E L + +++ +KP + ++  + +GF
Sbjct: 252 LKGLCYVGRVEDAYEFLMKIKKSSVKPDLYSYTAVMDGF 290

HSP 2 Score: 32.7 bits (73), Expect = 4.5e+02
Identity = 21/61 (34.43%), Postives = 29/61 (47.54%), Query Frame = 1


Query: 5   CRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEK--DVLEDAHQL 64
           C+     EA  +L    E G +PSVVTF  L N F      CR    +K  ++LE   ++
Sbjct: 186 CKKNDPSEAKRVLEHMVEIGFQPSVVTFTILINSF------CRRGKLQKAVEILEFMGRI 240

HSP 3 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1


Query: 1   MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           MDG C+VGRSDEAMELL+EA E GL P VVTFNTLFNG+
Sbjct: 165 MDGFCKVGRSDEAMELLDEAVEMGLTPDVVTFNTLFNGY 203

The following BLAST results are available for this feature:

BLAST of Csa3G728080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF40_CUCSA	1.2e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G728080 PE=4 SV=1	[more]
A0A067JGF6_JATCU	3.0e-09	77.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00655 PE=4 SV=1	[more]
A0A067JGF6_JATCU	5.0e-04	31.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00655 PE=4 SV=1	[more]
W9SS02_9ROSA	6.8e-01	30.77	Uncharacterized protein OS=Morus notabilis GN=L484_006096 PE=4 SV=1	[more]
A0A118K1R3_CYNCS	3.8e-04	31.75	Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ...	[more]

BLAST of Csa3G728080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06710.1	1.6e-06	47.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55840.1	4.8e-06	51.28	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G07290.1	8.2e-06	34.09	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	8.2e-06	51.28	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Csa3G728080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203558\|gb\|KGN58691.1\|	1.7e-50	100.00	hypothetical protein Csa_3G728080 [Cucumis sativus]	[more]
gi\|802778079\|ref\|XP_012091050.1\|	4.4e-09	77.50	PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatro...	[more]
gi\|802778079\|ref\|XP_012091050.1\|	7.2e-04	31.75	PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatro...	[more]
gi\|643705251\|gb\|KDP21868.1\|	7.2e-04	31.75	hypothetical protein JCGZ_00655 [Jatropha curcas]	[more]
gi\|731398659\|ref\|XP_010653334.1\|	9.1e+01	33.33	PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Vitis vin...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G728080.1	Csa3G728080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 1..39 score: 2.1
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 1..29 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 1..27 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..39 score: 1.2
None	No IPR available	PANTHER	PTHR24015:SF859	SUBFAMILY NOT NAMED	coord: 1..39 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G728080	CSPI03G30630	Wild cucumber (PI 183967)	cpicuB120
Csa3G728080	CsGy3G028460	Cucumber (Gy14) v2	cgybcuB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G728080	Silver-seed gourd	carcuB0175
Csa3G728080	Silver-seed gourd	carcuB0308
Csa3G728080	Silver-seed gourd	carcuB1011
Csa3G728080	Watermelon (97103) v2	cuwmbB187
Csa3G728080	Watermelon (97103) v2	cuwmbB202
Csa3G728080	Wax gourd	cuwgoB219
Csa3G728080	Wax gourd	cuwgoB328
Csa3G728080	Cucumber (Chinese Long) v2	cucuB091
Csa3G728080	Cucumber (Gy14) v1	cgycuB179
Csa3G728080	Cucumber (Gy14) v1	cgycuB268
Csa3G728080	Cucurbita maxima (Rimu)	cmacuB240
Csa3G728080	Cucurbita maxima (Rimu)	cmacuB657
Csa3G728080	Cucurbita maxima (Rimu)	cmacuB815
Csa3G728080	Cucurbita maxima (Rimu)	cmacuB855
Csa3G728080	Cucurbita moschata (Rifu)	cmocuB227
Csa3G728080	Cucurbita moschata (Rifu)	cmocuB647
Csa3G728080	Cucurbita moschata (Rifu)	cmocuB807
Csa3G728080	Melon (DHL92) v3.5.1	cumeB224
Csa3G728080	Watermelon (Charleston Gray)	cuwcgB195
Csa3G728080	Watermelon (Charleston Gray)	cuwcgB220
Csa3G728080	Watermelon (97103) v1	cuwmB199
Csa3G728080	Watermelon (97103) v1	cuwmB265
Csa3G728080	Cucurbita pepo (Zucchini)	cpecuB068
Csa3G728080	Cucurbita pepo (Zucchini)	cpecuB485
Csa3G728080	Cucurbita pepo (Zucchini)	cpecuB598
Csa3G728080	Cucurbita pepo (Zucchini)	cpecuB860
Csa3G728080	Bottle gourd (USVL1VR-Ls)	culsiB169
Csa3G728080	Bottle gourd (USVL1VR-Ls)	culsiB187
Csa3G728080	Cucumber (Gy14) v2	cgybcuB162
Csa3G728080	Melon (DHL92) v3.6.1	cumedB209