Csa3G653420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G653420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 25773319 .. 25773667 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATCGACGACCTCGGGGGGGCAAAACCCAAACCCAAAAATTTCCGAAATCCACACAGGCCGAGAAGTATCCCCTGGAAAACGCGGAGACGATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGGCTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTAGAAGTGTGATGGAGTTGAGGGGGAGGAGGGATTTGTGAAGGCGAGGCGGTGGAGTGGAGATTATTGAGAGGAAGATTTGTTGAAGGATGCGAGATTTGGGATATGGGATTGGCTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

mRNA sequence

ATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGGCTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTAGAAGATGCGAGATTTGGGATATGGGATTGGCTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

Coding sequence (CDS)

ATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGGCTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTAGAAGATGCGAGATTTGGGATATGGGATTGGCTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

Protein sequence

MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ*
Homology
[Close]
BLAST of Csa3G653420 vs. TrEMBL
Match: A0A0A0L9B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653420 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.0e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 58
          MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ
Sbjct: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 57

[Close]
BLAST of Csa3G653420 vs. NCBI nr
Match: gi|700203377|gb|KGN58510.1| (hypothetical protein Csa_3G653420 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 58
          MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ
Sbjct: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 57

The following BLAST results are available for this feature:
BLAST of Csa3G653420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9B8_CUCSA5.0e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G653420 PE=4 SV=1[more]
BLAST of Csa3G653420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203377|gb|KGN58510.1|7.2e-25100.00hypothetical protein Csa_3G653420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G653420.1Csa3G653420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G653420CSPI03G29010Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G653420Bottle gourd (USVL1VR-Ls)culsiB188
Csa3G653420Bottle gourd (USVL1VR-Ls)culsiB233
Csa3G653420Cucumber (Gy14) v2cgybcuB111
Csa3G653420Melon (DHL92) v3.6.1cumedB215
Csa3G653420Silver-seed gourdcarcuB0125
Csa3G653420Silver-seed gourdcarcuB0777
Csa3G653420Silver-seed gourdcarcuB0779
Csa3G653420Silver-seed gourdcarcuB0829
Csa3G653420Silver-seed gourdcarcuB0830
Csa3G653420Watermelon (97103) v2cuwmbB188
Csa3G653420Watermelon (97103) v2cuwmbB239
Csa3G653420Wax gourdcuwgoB243
Csa3G653420Cucumber (Gy14) v1cgycuB294
Csa3G653420Cucurbita maxima (Rimu)cmacuB243
Csa3G653420Cucurbita maxima (Rimu)cmacuB241
Csa3G653420Cucurbita maxima (Rimu)cmacuB256
Csa3G653420Cucurbita maxima (Rimu)cmacuB450
Csa3G653420Cucurbita maxima (Rimu)cmacuB453
Csa3G653420Cucurbita moschata (Rifu)cmocuB230
Csa3G653420Cucurbita moschata (Rifu)cmocuB228
Csa3G653420Cucurbita moschata (Rifu)cmocuB241
Csa3G653420Cucurbita moschata (Rifu)cmocuB437
Csa3G653420Cucurbita moschata (Rifu)cmocuB440
Csa3G653420Melon (DHL92) v3.5.1cumeB229
Csa3G653420Watermelon (Charleston Gray)cuwcgB190
Csa3G653420Watermelon (Charleston Gray)cuwcgB196
Csa3G653420Watermelon (Charleston Gray)cuwcgB253
Csa3G653420Watermelon (97103) v1cuwmB193
Csa3G653420Watermelon (97103) v1cuwmB203
Csa3G653420Watermelon (97103) v1cuwmB218
Csa3G653420Cucurbita pepo (Zucchini)cpecuB545
Csa3G653420Cucurbita pepo (Zucchini)cpecuB562
Csa3G653420Cucurbita pepo (Zucchini)cpecuB599
Csa3G653420Cucurbita pepo (Zucchini)cpecuB612