Csa3G651690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G651690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 25623455 .. 25623733 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGGTATGTTGGATTATACACGTATCGGTTGGTTATGTTCAGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

mRNA sequence

ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

Coding sequence (CDS)

ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

Protein sequence

MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIPFCVFFTLEVGNPEWAKLLI*

Homology

[Close]

BLAST of Csa3G651690 vs. TrEMBL
Match: A0A0A0L9I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651690 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60
          MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP
Sbjct: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60

Query: 61 FCVFFTLEVGNPEWAKLLI 80
          FCVFFTLEVGNPEWAKLLI
Sbjct: 61 FCVFFTLEVGNPEWAKLLI 79

[Close]

BLAST of Csa3G651690 vs. NCBI nr
Match: gi|700203350|gb|KGN58483.1| (hypothetical protein Csa_3G651690 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.4e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60
          MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP
Sbjct: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60

Query: 61 FCVFFTLEVGNPEWAKLLI 80
          FCVFFTLEVGNPEWAKLLI
Sbjct: 61 FCVFFTLEVGNPEWAKLLI 79

The following BLAST results are available for this feature:

BLAST of Csa3G651690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9I3_CUCSA	3.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651690 PE=4 SV=1	[more]

BLAST of Csa3G651690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203350\|gb\|KGN58483.1\|	5.4e-39	100.00	hypothetical protein Csa_3G651690 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015369	calcium:proton antiporter activity
molecular_function	GO:0008324	cation transmembrane transporter activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097755	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G651690.1	Csa3G651690.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097755	CU097755	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G651690	Watermelon (Charleston Gray)	cuwcgB253
Csa3G651690	Watermelon (97103) v1	cuwmB218
Csa3G651690	Cucurbita pepo (Zucchini)	cpecuB559
Csa3G651690	Cucurbita pepo (Zucchini)	cpecuB601
Csa3G651690	Bottle gourd (USVL1VR-Ls)	culsiB233
Csa3G651690	Cucumber (Gy14) v2	cgybcuB111
Csa3G651690	Silver-seed gourd	carcuB0125
Csa3G651690	Silver-seed gourd	carcuB0223
Csa3G651690	Watermelon (97103) v2	cuwmbB239
Csa3G651690	Wax gourd	cuwgoB288
Csa3G651690	Cucurbita maxima (Rimu)	cmacuB243
Csa3G651690	Cucurbita maxima (Rimu)	cmacuB447
Csa3G651690	Cucurbita moschata (Rifu)	cmocuB230
Csa3G651690	Cucurbita moschata (Rifu)	cmocuB434