Csa3G645910 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G645910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR008011 (Complex 1 LYR protein)
LocationChr3 : 25339222 .. 25339660 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTTAACAGTGTGCACCATCAAAAGGCAATAGTACTTCACTCTCAGCTCAGATCACAAAGAAACAAACTTTTCTTTCTTCCTCATTTGATCTTTGTTTTCAATTGTAATTGACATGGGCTGTGATGCACAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

mRNA sequence

ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTTAACAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

Coding sequence (CDS)

ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTTAACAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCCTGA

Protein sequence

MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP*
Homology
[Close]
BLAST of Csa3G645910 vs. TrEMBL
Match: A0A0A0L9E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. TrEMBL
Match: V4TI91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033129mg PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-41
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+SE +Q AKVYRQLLKAVK H+GKE+ K HF++YV Q+FR  S LS P SI+Q+IKLA 
Sbjct: 1   MSSEIMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAH 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHH KDLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. TrEMBL
Match: A0A067DNY7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033847mg PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-41
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+SE +Q AKVYRQLLKAVK H+GKE+ K HF++YV Q+FR  S LS P SI+Q+IKLA 
Sbjct: 1   MSSEIMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAH 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHH KDLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. TrEMBL
Match: A0A059BGX6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02800 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-41
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M SEALQ AKVYR LLKAVK+H+GKEE+KKHF +YV ++FR   +LS P SIQQ+IKLA+
Sbjct: 1   MGSEALQAAKVYRHLLKAVKRHIGKEETKKHFAEYVTEEFRKNCVLSDPSSIQQKIKLAK 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYT+LLNSVHH  DLLFSYNIAVDR++EMKRVLGKSA+SVGL LPEVYQP
Sbjct: 61  DYTYLLNSVHHHMDLLFSYNIAVDRTEEMKRVLGKSASSVGLRLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. TrEMBL
Match: M5X2W4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013656mg PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M++EALQVAKVYR LL+AVKKHV KE+  +HF +YV ++FR+   LS P SIQQ+IKLA 
Sbjct: 1   MSAEALQVAKVYRHLLRAVKKHVAKEDRARHFKEYVTEEFRNNCKLSDPSSIQQKIKLAH 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           +YTFLLNSVHH +DLLFSYNIAVDRSDEMK+VLGKSAASVGL LPEVYQP
Sbjct: 61  NYTFLLNSVHHHQDLLFSYNIAVDRSDEMKKVLGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. TAIR10
Match: AT5G51960.1 (AT5G51960.1 Complex 1 LYR protein (InterPro:IPR008011))

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-33
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+ E +  A+VYR LLKAV KHVGKE+ K HF+D+V Q+FR        ++  ++I LAR
Sbjct: 1   MSGEVVLAARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFRK-------NANSEKINLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           +YT+LLNS+H  KDLLFSYNIAVDR++EMKRVL KSAASVGL LPEVY+P
Sbjct: 61  NYTYLLNSIHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYEP 103

[Close]
BLAST of Csa3G645910 vs. NCBI nr
Match: gi|449453377|ref|XP_004144434.1| (PREDICTED: uncharacterized protein LOC101204721 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. NCBI nr
Match: gi|702423380|ref|XP_010067265.1| (PREDICTED: uncharacterized protein LOC104454186 [Eucalyptus grandis])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M SEALQ AKVYR LLKAVK+H+GKEE+KKHF +YV ++FR   +LS P SIQQ+IKLA+
Sbjct: 1   MGSEALQAAKVYRHLLKAVKRHIGKEETKKHFAEYVTEEFRKNCVLSDPSSIQQKIKLAK 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYT+LLNSVHH  DLLFSYNIAVDR++EMKRVLGKSA+SVGL LPEVYQP
Sbjct: 61  DYTYLLNSVHHHMDLLFSYNIAVDRTEEMKRVLGKSASSVGLRLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. NCBI nr
Match: gi|567887378|ref|XP_006436211.1| (hypothetical protein CICLE_v10033129mg [Citrus clementina])

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+SE +Q AKVYRQLLKAVK H+GKE+ K HF++YV Q+FR  S LS P SI+Q+IKLA 
Sbjct: 1   MSSEIMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAH 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DYTFLLNSVHH KDLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 61  DYTFLLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. NCBI nr
Match: gi|694410681|ref|XP_009333740.1| (PREDICTED: uncharacterized protein LOC103926650 [Pyrus x bretschneideri])

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+S ALQVAKVYRQLLKAVKKHV KEE+K+HF++Y  ++FR+   LS P SIQ +IKLA 
Sbjct: 1   MSSGALQVAKVYRQLLKAVKKHVAKEENKRHFIEYATEEFRNNCKLSDPSSIQHKIKLAE 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           +YT LLNSVHH K+LLFSYNIAVDRSDEMKRVLGKSAASVGL LPEVYQP
Sbjct: 61  NYTLLLNSVHHHKELLFSYNIAVDRSDEMKRVLGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Csa3G645910 vs. NCBI nr
Match: gi|1009120908|ref|XP_015877176.1| (PREDICTED: uncharacterized protein LOC107413677 [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-39
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60
           M+SEALQVAKVYR LL+AVKKH+GKE++KKHF +YV ++FR  SILS   SI+Q+IKLAR
Sbjct: 1   MSSEALQVAKVYRNLLRAVKKHIGKEDTKKHFREYVIEEFRKNSILSDISSIEQKIKLAR 60

Query: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 111
           DY  LLNSVH+ KDLLFSYNIAVDRSDE KRVLGKSAASVGL LPEVYQP
Sbjct: 61  DYAVLLNSVHYHKDLLFSYNIAVDRSDETKRVLGKSAASVGLQLPEVYQP 110

The following BLAST results are available for this feature:
BLAST of Csa3G645910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E2_CUCSA1.3e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645910 PE=4 SV=1[more]
V4TI91_9ROSI7.3e-4178.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033129mg PE=3 SV=1[more]
A0A067DNY7_CITSI7.3e-4178.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033847mg PE=3 SV=1[more]
A0A059BGX6_EUCGR7.3e-4176.36Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02800 PE=3 SV=1[more]
M5X2W4_PRUPE6.8e-3975.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013656mg PE=3 SV=1[more]
BLAST of Csa3G645910 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51960.16.5e-3362.73 Complex 1 LYR protein (InterPro:IPR008011)[more]
BLAST of Csa3G645910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453377|ref|XP_004144434.1|1.8e-53100.00PREDICTED: uncharacterized protein LOC101204721 [Cucumis sativus][more]
gi|702423380|ref|XP_010067265.1|1.0e-4076.36PREDICTED: uncharacterized protein LOC104454186 [Eucalyptus grandis][more]
gi|567887378|ref|XP_006436211.1|1.0e-4078.18hypothetical protein CICLE_v10033129mg [Citrus clementina][more]
gi|694410681|ref|XP_009333740.1|1.2e-3977.27PREDICTED: uncharacterized protein LOC103926650 [Pyrus x bretschneideri][more]
gi|1009120908|ref|XP_015877176.1|1.5e-3978.18PREDICTED: uncharacterized protein LOC107413677 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095625cucumber EST collection version 3.0transcribed_cluster
CU117872cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G645910.1Csa3G645910.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU117872CU117872transcribed_cluster
CU095625CU095625transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35763FAMILY NOT NAMEDcoord: 1..110
score: 1.5
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 9..102
score: 9.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G645910CSPI03G28410Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G645910Bottle gourd (USVL1VR-Ls)culsiB182
Csa3G645910Bottle gourd (USVL1VR-Ls)culsiB233
Csa3G645910Cucumber (Gy14) v2cgybcuB111
Csa3G645910Cucumber (Gy14) v2cgybcuB312
Csa3G645910Melon (DHL92) v3.6.1cumedB180
Csa3G645910Melon (DHL92) v3.6.1cumedB195
Csa3G645910Silver-seed gourdcarcuB0223
Csa3G645910Silver-seed gourdcarcuB0497
Csa3G645910Silver-seed gourdcarcuB0628
Csa3G645910Silver-seed gourdcarcuB0785
Csa3G645910Watermelon (97103) v2cuwmbB239
Csa3G645910Watermelon (97103) v2cuwmbB256
Csa3G645910Wax gourdcuwgoB276
Csa3G645910Wax gourdcuwgoB350
Csa3G645910Cucumber (Chinese Long) v2cucuB133
Csa3G645910Cucumber (Gy14) v1cgycuB216
Csa3G645910Cucumber (Gy14) v1cgycuB506
Csa3G645910Cucurbita maxima (Rimu)cmacuB243
Csa3G645910Cucurbita maxima (Rimu)cmacuB447
Csa3G645910Cucurbita maxima (Rimu)cmacuB887
Csa3G645910Cucurbita moschata (Rifu)cmocuB230
Csa3G645910Cucurbita moschata (Rifu)cmocuB434
Csa3G645910Cucurbita moschata (Rifu)cmocuB874
Csa3G645910Melon (DHL92) v3.5.1cumeB194
Csa3G645910Melon (DHL92) v3.5.1cumeB209
Csa3G645910Watermelon (Charleston Gray)cuwcgB179
Csa3G645910Watermelon (Charleston Gray)cuwcgB253
Csa3G645910Watermelon (97103) v1cuwmB184
Csa3G645910Watermelon (97103) v1cuwmB218
Csa3G645910Cucurbita pepo (Zucchini)cpecuB138
Csa3G645910Cucurbita pepo (Zucchini)cpecuB312
Csa3G645910Cucurbita pepo (Zucchini)cpecuB559
Csa3G645910Cucurbita pepo (Zucchini)cpecuB601