Csa3G645900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G645900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLipid transfer protein-like protein; contains IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)
LocationChr3 : 25333897 .. 25334340 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTGATGGAGGAGTGTTGTGATTCGATTGAAGGTATAAAAGAAAGTAAGCCAAAGTGCTTGTGTTTCTTCATACAACAGACACGTAATGGAAATCAACACATCAAGAGTTTAGGAATTCAAGAGATTAAGCTTTTACATCTTCCTTCTGTTTGTCACTTGAAAAGCTCGAGTGTTAGCCATTCCCTAACTAATTTCTCTTCCCATCCCACTTTCTCGAAGTCATTGCTGCACACCTCTTTTAAATTATCTTCCTGTGCTCGTCCTGGCACCACCCTTCCTAATAAACACACCGCCACCACCGCTAAAACCACACCTGATCTCATCACCTTTCTTCCACTCTTCATTTTTTTCTCTTTCTCGATTGCTATGATCTCCAAATTAATGAACCCATTTGGAGATGAACAACGTTTTTCCATGGTGGGCGACAATTGTCGGTGA

mRNA sequence

ATGACACTGATGGAGGAGTGTTGTGATTCGATTGAAGGTATAAAAGAAAGTAAGCCAAAGTGCTTGTGTTTCTTCATACAACAGACACGTAATGGAAATCAACACATCAAGAGTTTAGGAATTCAAGAGATTAAGCTTTTACATCTTCCTTCTGTTTGTCACTTGAAAAGCTCGAGTGTTAGCCATTCCCTAACTAATTTCTCTTCCCATCCCACTTTCTCGAAGTCATTGCTGCACACCTCTTTTAAATTATCTTCCTGTGCTCGTCCTGGCACCACCCTTCCTAATAAACACACCGCCACCACCGCTAAAACCACACCTGATCTCATCACCTTTCTTCCACTCTTCATTTTTTTCTCTTTCTCGATTGCTATGATCTCCAAATTAATGAACCCATTTGGAGATGAACAACGTTTTTCCATGGTGGGCGACAATTGTCGGTGA

Coding sequence (CDS)

ATGACACTGATGGAGGAGTGTTGTGATTCGATTGAAGGTATAAAAGAAAGTAAGCCAAAGTGCTTGTGTTTCTTCATACAACAGACACGTAATGGAAATCAACACATCAAGAGTTTAGGAATTCAAGAGATTAAGCTTTTACATCTTCCTTCTGTTTGTCACTTGAAAAGCTCGAGTGTTAGCCATTCCCTAACTAATTTCTCTTCCCATCCCACTTTCTCGAAGTCATTGCTGCACACCTCTTTTAAATTATCTTCCTGTGCTCGTCCTGGCACCACCCTTCCTAATAAACACACCGCCACCACCGCTAAAACCACACCTGATCTCATCACCTTTCTTCCACTCTTCATTTTTTTCTCTTTCTCGATTGCTATGATCTCCAAATTAATGAACCCATTTGGAGATGAACAACGTTTTTCCATGGTGGGCGACAATTGTCGGTGA

Protein sequence

MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFSFSIAMISKLMNPFGDEQRFSMVGDNCR*
Homology
[Close]
BLAST of Csa3G645900 vs. Swiss-Prot
Match: LTPG1_ARATH (Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-13
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           ++CCD++E IKE  PKCLCF IQQ + G Q +K LG+QE KL+ LP+ C L ++S+++  
Sbjct: 58  KKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCP 117

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAK 105
                 P+   + + T+   ++   P    P     +T K
Sbjct: 118 KLLGISPSSPDAAVFTNNATTTPVAPAGKSPATPATSTDK 157

[Close]
BLAST of Csa3G645900 vs. TrEMBL
Match: A0A0A0LCN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645900 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV 60
           MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV
Sbjct: 1   MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV 60

Query: 61  SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS 120
           SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS
Sbjct: 61  SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS 120

Query: 121 FSIAMISKLMNPFGDEQRFSMVGDNCR 148
           FSIAMISKLMNPFGDEQRFSMVGDNCR
Sbjct: 121 FSIAMISKLMNPFGDEQRFSMVGDNCR 147

[Close]
BLAST of Csa3G645900 vs. TrEMBL
Match: A0A0A0KV96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.7e-22
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           EECCDSIE IKESKPKCLCFFIQQT NGNQ IKSLGIQEIKLL LPSVCHLK+SSVS+  
Sbjct: 59  EECCDSIEDIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSY-C 118

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPD 109
                 P  S      +   S+   P T      +ATT +T+PD
Sbjct: 119 PKLLGLPANSPD----AAIFSNSTSPATPA----SATTTRTSPD 153

[Close]
BLAST of Csa3G645900 vs. TrEMBL
Match: A0A067K3I6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17968 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 2   TLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVS 61
           T  ++CC S++ +KES PKCLCF IQQT NG+  IKSLGIQE KLL LPS C L+++S+S
Sbjct: 46  TPTKDCCGSVKELKESDPKCLCFMIQQTHNGSAQIKSLGIQETKLLQLPSACQLQNASIS 105

Query: 62  HSLTNFSSHPTFSKSLLHTSFKLSSCARP----GTTLPNK 98
                    P+   + + T+   SS + P    GT+ P K
Sbjct: 106 FCPKLLGLSPSSPDAAIFTNATASSSSTPTSSTGTSTPEK 145

[Close]
BLAST of Csa3G645900 vs. TrEMBL
Match: A0A0B2QRP0_GLYSO (Putative GPI-anchored protein OS=Glycine soja GN=glysoja_025233 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           +ECCD+   IKES P+CLC+ IQ+T  G+  +KSLGIQE KLL LPSVC++K++S+++  
Sbjct: 56  KECCDAATAIKESNPECLCYIIQETHKGSPQVKSLGIQEAKLLQLPSVCNVKNASITNCP 115

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTT 107
                 P+   + + TS           T P+  T T ++TT
Sbjct: 116 KLLGLSPSSPDAAIFTS-------NSSKTTPSAPTTTNSQTT 150

[Close]
BLAST of Csa3G645900 vs. TrEMBL
Match: K7MP81_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G005800 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           +ECCD+   IKES P+CLC+ IQ+T  G+  +KSLGIQE KLL LPSVC++K++S+++  
Sbjct: 56  KECCDAATAIKESNPECLCYIIQETHKGSPQVKSLGIQEAKLLQLPSVCNVKNASITNCP 115

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTT 107
                 P+   + + TS           T P+  T T ++TT
Sbjct: 116 KLLGLSPSSPDAAIFTS-------NSSKTTPSAPTTTNSQTT 150

[Close]
BLAST of Csa3G645900 vs. TAIR10
Match: AT1G27950.1 (AT1G27950.1 glycosylphosphatidylinositol-anchored lipid protein transfer 1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           ++CCD++E IKE  PKCLCF IQQ + G Q +K LG+QE KL+ LP+ C L ++S+++  
Sbjct: 58  KKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCP 117

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAK 105
                 P+   + + T+   ++   P    P     +T K
Sbjct: 118 KLLGISPSSPDAAVFTNNATTTPVAPAGKSPATPATSTDK 157

[Close]
BLAST of Csa3G645900 vs. NCBI nr
Match: gi|700203319|gb|KGN58452.1| (hypothetical protein Csa_3G645900 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV 60
           MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV
Sbjct: 1   MTLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSV 60

Query: 61  SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS 120
           SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS
Sbjct: 61  SHSLTNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPDLITFLPLFIFFS 120

Query: 121 FSIAMISKLMNPFGDEQRFSMVGDNCR 148
           FSIAMISKLMNPFGDEQRFSMVGDNCR
Sbjct: 121 FSIAMISKLMNPFGDEQRFSMVGDNCR 147

[Close]
BLAST of Csa3G645900 vs. NCBI nr
Match: gi|659090460|ref|XP_008446028.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-23
Identity = 66/104 (63.46%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           EECCDSIEGIKESKPKCLCFFIQQT NGNQ IKSLGIQEIKLL LPSVCHLK+SSVS+  
Sbjct: 63  EECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSY-C 122

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPD 109
                 P  S      S  L+S A P        +ATT +T+PD
Sbjct: 123 PKLLGLPANSPDAAIFS-NLTSPATPA-------SATTTRTSPD 157

[Close]
BLAST of Csa3G645900 vs. NCBI nr
Match: gi|778704575|ref|XP_004135333.2| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           EECCDSIE IKESKPKCLCFFIQQT NGNQ IKSLGIQEIKLL LPSVCHLK+SSVS+  
Sbjct: 59  EECCDSIEDIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSY-C 118

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTTPD 109
                 P  S      +   S+   P T      +ATT +T+PD
Sbjct: 119 PKLLGLPANSPD----AAIFSNSTSPATPA----SATTTRTSPD 153

[Close]
BLAST of Csa3G645900 vs. NCBI nr
Match: gi|802724321|ref|XP_012085688.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Jatropha curcas])

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-15
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 2   TLMEECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVS 61
           T  ++CC S++ +KES PKCLCF IQQT NG+  IKSLGIQE KLL LPS C L+++S+S
Sbjct: 46  TPTKDCCGSVKELKESDPKCLCFMIQQTHNGSAQIKSLGIQETKLLQLPSACQLQNASIS 105

Query: 62  HSLTNFSSHPTFSKSLLHTSFKLSSCARP----GTTLPNK 98
                    P+   + + T+   SS + P    GT+ P K
Sbjct: 106 FCPKLLGLSPSSPDAAIFTNATASSSSTPTSSTGTSTPEK 145

[Close]
BLAST of Csa3G645900 vs. NCBI nr
Match: gi|351722981|ref|NP_001235727.1| (uncharacterized protein LOC100305718 precursor [Glycine max])

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-14
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   EECCDSIEGIKESKPKCLCFFIQQTRNGNQHIKSLGIQEIKLLHLPSVCHLKSSSVSHSL 64
           +ECCD+   IKES P+CLC+ IQ+T  G+  +KSLGIQE KLL LPSVC++K++S+++  
Sbjct: 56  KECCDAATAIKESNPECLCYIIQETHKGSPQVKSLGIQEAKLLQLPSVCNVKNASITNCP 115

Query: 65  TNFSSHPTFSKSLLHTSFKLSSCARPGTTLPNKHTATTAKTT 107
                 P+   + + TS           T P+  T T ++TT
Sbjct: 116 KLLGLSPSSPDAAIFTS-------NSSKTTPSAPTTTNSQTT 150

The following BLAST results are available for this feature:
BLAST of Csa3G645900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LTPG1_ARATH3.2e-1336.00Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LT... [more]
BLAST of Csa3G645900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCN4_CUCSA1.8e-79100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645900 PE=4 SV=1[more]
A0A0A0KV96_CUCSA7.7e-2260.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1[more]
A0A067K3I6_JATCU3.1e-1546.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17968 PE=4 SV=1[more]
A0A0B2QRP0_GLYSO5.9e-1441.18Putative GPI-anchored protein OS=Glycine soja GN=glysoja_025233 PE=4 SV=1[more]
K7MP81_SOYBN5.9e-1441.18Uncharacterized protein OS=Glycine max GN=GLYMA_18G005800 PE=4 SV=1[more]
BLAST of Csa3G645900 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27950.11.8e-1436.00 glycosylphosphatidylinositol-anchored lipid protein transfer 1[more]
BLAST of Csa3G645900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203319|gb|KGN58452.1|2.6e-79100.00hypothetical protein Csa_3G645900 [Cucumis sativus][more]
gi|659090460|ref|XP_008446028.1|5.9e-2363.46PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo][more]
gi|778704575|ref|XP_004135333.2|1.1e-2160.58PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus][more]
gi|802724321|ref|XP_012085688.1|4.5e-1546.00PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Jatropha curcas][more]
gi|351722981|ref|NP_001235727.1|8.5e-1441.18uncharacterized protein LOC100305718 precursor [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G645900.1Csa3G645900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 5..59
score: 1.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 5..68
score: 3.9
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 5..61
score: 7.
NoneNo IPR availablePANTHERPTHR33044FAMILY NOT NAMEDcoord: 6..61
score: 4.7
NoneNo IPR availablePANTHERPTHR33044:SF7NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1coord: 6..61
score: 4.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G645900CsGy3G026360Cucumber (Gy14) v2cgybcuB111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G645900Cucurbita pepo (Zucchini)cpecuB138
Csa3G645900Cucurbita pepo (Zucchini)cpecuB312
Csa3G645900Cucurbita pepo (Zucchini)cpecuB559
Csa3G645900Cucurbita pepo (Zucchini)cpecuB601
Csa3G645900Bottle gourd (USVL1VR-Ls)culsiB182
Csa3G645900Bottle gourd (USVL1VR-Ls)culsiB233
Csa3G645900Cucumber (Gy14) v2cgybcuB312
Csa3G645900Melon (DHL92) v3.6.1cumedB180
Csa3G645900Melon (DHL92) v3.6.1cumedB195
Csa3G645900Silver-seed gourdcarcuB0223
Csa3G645900Silver-seed gourdcarcuB0497
Csa3G645900Silver-seed gourdcarcuB0628
Csa3G645900Silver-seed gourdcarcuB0785
Csa3G645900Watermelon (97103) v2cuwmbB239
Csa3G645900Watermelon (97103) v2cuwmbB256
Csa3G645900Wax gourdcuwgoB276
Csa3G645900Wax gourdcuwgoB350
Csa3G645900Cucumber (Chinese Long) v2cucuB133
Csa3G645900Cucumber (Gy14) v1cgycuB216
Csa3G645900Cucumber (Gy14) v1cgycuB506
Csa3G645900Cucurbita maxima (Rimu)cmacuB243
Csa3G645900Cucurbita maxima (Rimu)cmacuB447
Csa3G645900Cucurbita maxima (Rimu)cmacuB887
Csa3G645900Cucurbita moschata (Rifu)cmocuB230
Csa3G645900Cucurbita moschata (Rifu)cmocuB434
Csa3G645900Cucurbita moschata (Rifu)cmocuB874
Csa3G645900Melon (DHL92) v3.5.1cumeB194
Csa3G645900Melon (DHL92) v3.5.1cumeB209
Csa3G645900Watermelon (Charleston Gray)cuwcgB179
Csa3G645900Watermelon (Charleston Gray)cuwcgB253
Csa3G645900Watermelon (97103) v1cuwmB184
Csa3G645900Watermelon (97103) v1cuwmB218