Csa3G644820 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G644820
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Kinase, putative
Location	Chr3 : 25265069 .. 25265327 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCTAAAAACATTTGGAGAAATGGCAGAAAAATGCCTTGCTGGTGAAGGGAAGATTTGTCCAACAATGAGCAAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCTGCACTAATGATGCACAAAGTTCTTGCGCAGTAAACTCAGAAGGAGCAGAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAATGCTCCAACATGAAAACTTCAACTCCAACTGATCACTCATCCTAA

mRNA sequence

ATGGCAGAAAAATGCCTTGCTGGTGAAGGGAAGATTTGTCCAACAATGAGCAAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCTGCACTAATGATGCACAAAGTTCTTGCGCAGTAAACTCAGAAGGAGCAGAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAATGCTCCAACATGAAAACTTCAACTCCAACTGATCACTCATCCTAA

Coding sequence (CDS)

ATGGCAGAAAAATGCCTTGCTGGTGAAGGGAAGATTTGTCCAACAATGAGCAAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCTGCACTAATGATGCACAAAGTTCTTGCGCAGTAAACTCAGAAGGAGCAGAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAATGCTCCAACATGAAAACTTCAACTCCAACTGATCACTCATCCTAA

Protein sequence

MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLDGEEECSNMKTSTPTDHSS*

Homology

[Close]

BLAST of Csa3G644820 vs. Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGK  P M +VLW LEY LQ+H+AW+   + ++S + +S+  E   +   L 
Sbjct: 768 IAEKCLADEGKNRPMMGEVLWSLEYVLQIHEAWLRKQNGENSFS-SSQAVEEAPESFTLP 827

Query: 61  GEEECSNMKTS 72
               CSN  +S
Sbjct: 828 A---CSNQDSS 834

[Close]

BLAST of Csa3G644820 vs. TrEMBL
Match: A0A0A0L9C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644820 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.3e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
          MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD
Sbjct: 1  MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60

Query: 61 GEEECSNMKTSTPTDHSS 79
          GEEECSNMKTSTPTDHSS
Sbjct: 61 GEEECSNMKTSTPTDHSS 78

[Close]

BLAST of Csa3G644820 vs. TrEMBL
Match: A0A0A0KM70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525520 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-29
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGKI PTM +VLWHLEYSLQLHDAWI TNDAQSS AVNSEGA+AEEQRL+LD
Sbjct: 771 IAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSFAVNSEGAQAEEQRLNLD 830

Query: 61  GEEECSNMKTSTPTDHSS 79
           GEEE SN K STPTDHSS
Sbjct: 831 GEEESSNTKASTPTDHSS 848

[Close]

BLAST of Csa3G644820 vs. TrEMBL
Match: B9SB26_RICCO (Kinase, putative OS=Ricinus communis GN=RCOM_1337350 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA +GK  PTM ++LWHLEY LQLH+AW+C N  ++S + +    + EE+  +  
Sbjct: 766 IAEKCLADDGKNRPTMGEILWHLEYVLQLHEAWVCANVTENSLSSSQAMEDVEERVQEKV 825

Query: 61  GEEECSNMKTSTP 74
             +E  N +T  P
Sbjct: 826 QGQESINEETGRP 838

[Close]

BLAST of Csa3G644820 vs. TrEMBL
Match: A0A067KFC0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09214 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-09
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGK  PTM +VLWHLEY LQL++AW+ TN A+SS   +S+  E  ++R++ +
Sbjct: 766 IAEKCLADEGKTRPTMGEVLWHLEYVLQLYEAWMRTNVAESS-LTSSQAMEELDERVE-E 825

Query: 61  GEEECSNMKTSTP 74
             ++ SN +   P
Sbjct: 826 KTQQSSNEEIDKP 836

[Close]

BLAST of Csa3G644820 vs. TrEMBL
Match: M5X9T5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001294mg PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.9e-09
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTN-------DAQSSCAVNSEGAEAE 60
           +AEKCLA EGK  PT+ +VLWHLEY LQLH+AW+ TN        +Q+  A+    AE  
Sbjct: 768 IAEKCLADEGKSRPTLGQVLWHLEYVLQLHEAWMRTNAGDNSFTSSQAFGALVEGEAEEG 827

Query: 61  EQRLDLDGEEECSNMKTSTPTDHSS 79
           E    LD E  CS   T+  ++ S+
Sbjct: 828 EGPPSLDEETGCSRKSTTRGSNEST 852

[Close]

BLAST of Csa3G644820 vs. TAIR10
Match: AT1G30570.1 (AT1G30570.1 hercules receptor kinase 2)

HSP 1 Score: 56.6 bits (135), Expect = 8.0e-09
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGK  P M +VLW LEY LQ+H+AW+   + ++S + +S+  E   +   L 
Sbjct: 768 IAEKCLADEGKNRPMMGEVLWSLEYVLQIHEAWLRKQNGENSFS-SSQAVEEAPESFTLP 827

Query: 61  GEEECSNMKTS 72
               CSN  +S
Sbjct: 828 A---CSNQDSS 834

[Close]

BLAST of Csa3G644820 vs. NCBI nr
Match: gi|700203310|gb|KGN58443.1| (hypothetical protein Csa_3G644820 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
          MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD
Sbjct: 1  MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60

Query: 61 GEEECSNMKTSTPTDHSS 79
          GEEECSNMKTSTPTDHSS
Sbjct: 61 GEEECSNMKTSTPTDHSS 78

[Close]

BLAST of Csa3G644820 vs. NCBI nr
Match: gi|659078091|ref|XP_008439544.1| (PREDICTED: probable receptor-like protein kinase At1g30570 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGKI PTM +VLWHLEYSLQLHDAWI TNDAQSSCAV+SEGA+ EEQRLDLD
Sbjct: 771 IAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSCAVDSEGAQTEEQRLDLD 830

Query: 61  GEEECSNMKTSTPTDHSS 79
           GEEE SNMK STPTDHSS
Sbjct: 831 GEEESSNMKASTPTDHSS 848

[Close]

BLAST of Csa3G644820 vs. NCBI nr
Match: gi|778721599|ref|XP_011658325.1| (PREDICTED: probable receptor-like protein kinase At1g30570 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-29
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSEGAEAEEQRLDLD 60
           +AEKCLA EGKI PTM +VLWHLEYSLQLHDAWI TNDAQSS AVNSEGA+AEEQRL+LD
Sbjct: 771 IAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSFAVNSEGAQAEEQRLNLD 830

Query: 61  GEEECSNMKTSTPTDHSS 79
           GEEE SN K STPTDHSS
Sbjct: 831 GEEESSNTKASTPTDHSS 848

[Close]

BLAST of Csa3G644820 vs. NCBI nr
Match: gi|694434382|ref|XP_009344414.1| (PREDICTED: probable receptor-like protein kinase At1g30570 [Pyrus x bretschneideri])

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSSCAVNSE-GAEAEEQR--L 60
           +AEKCLA EGK  PTM +VLWHLEY+LQLH+ W+ TN   +S   +   G EAEE+    
Sbjct: 766 IAEKCLADEGKSRPTMGEVLWHLEYALQLHEPWMRTNAGDNSFTSSQVFGGEAEEKEGAP 825

Query: 61  DLDGEEECSNMKTSTPTDHSS 79
             D E  CS   T+  +D S+
Sbjct: 826 SFDEEAGCSGKSTTRESDESA 846

[Close]

BLAST of Csa3G644820 vs. NCBI nr
Match: gi|657982699|ref|XP_008383396.1| (PREDICTED: probable receptor-like protein kinase At1g30570 [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-10
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1


Query: 1   MAEKCLAGEGKICPTMSKVLWHLEYSLQLHDAWICTNDAQSS-CAVNSEGAEAEEQR--L 60
           +AEKCLA  GK  PTM +VLWHLEY+LQLH+AW+ TN   +S  +  + G EA+E+    
Sbjct: 766 IAEKCLADGGKSRPTMGEVLWHLEYALQLHEAWMRTNAGDNSFTSSQAFGGEAQEKEGAP 825

Query: 61  DLDGEEECSNMKTSTPTDHSS 79
             D E  CS   T+  +D S+
Sbjct: 826 SFDEEAGCSGQSTTRASDESA 846

The following BLAST results are available for this feature:

BLAST of Csa3G644820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1357_ARATH	1.4e-07	42.25	Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g3...	[more]

BLAST of Csa3G644820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9C8_CUCSA	8.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644820 PE=4 SV=1	[more]
A0A0A0KM70_CUCSA	3.5e-29	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525520 PE=3 SV=1	[more]
B9SB26_RICCO	1.1e-09	43.84	Kinase, putative OS=Ricinus communis GN=RCOM_1337350 PE=3 SV=1	[more]
A0A067KFC0_JATCU	6.8e-09	47.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09214 PE=3 SV=1	[more]
M5X9T5_PRUPE	8.9e-09	44.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001294mg PE=3 SV=1	[more]

BLAST of Csa3G644820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30570.1	8.0e-09	42.25	hercules receptor kinase 2	[more]

BLAST of Csa3G644820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203310\|gb\|KGN58443.1\|	1.2e-38	100.00	hypothetical protein Csa_3G644820 [Cucumis sativus]	[more]
gi\|659078091\|ref\|XP_008439544.1\|	1.6e-30	85.90	PREDICTED: probable receptor-like protein kinase At1g30570 [Cucumis melo]	[more]
gi\|778721599\|ref\|XP_011658325.1\|	5.0e-29	84.62	PREDICTED: probable receptor-like protein kinase At1g30570 [Cucumis sativus]	[more]
gi\|694434382\|ref\|XP_009344414.1\|	4.0e-10	48.15	PREDICTED: probable receptor-like protein kinase At1g30570 [Pyrus x bretschneide...	[more]
gi\|657982699\|ref\|XP_008383396.1\|	8.9e-10	46.91	PREDICTED: probable receptor-like protein kinase At1g30570 [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G644820.1	Csa3G644820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G644820	CSPI03G28330	Wild cucumber (PI 183967)	cpicuB120
Csa3G644820	Cucsa.149500	Cucumber (Gy14) v1	cgycuB216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G644820	Melon (DHL92) v3.6.1	cumedB180
Csa3G644820	Melon (DHL92) v3.6.1	cumedB195
Csa3G644820	Silver-seed gourd	carcuB0223
Csa3G644820	Silver-seed gourd	carcuB0497
Csa3G644820	Silver-seed gourd	carcuB0628
Csa3G644820	Silver-seed gourd	carcuB0785
Csa3G644820	Watermelon (97103) v2	cuwmbB239
Csa3G644820	Watermelon (97103) v2	cuwmbB256
Csa3G644820	Wax gourd	cuwgoB276
Csa3G644820	Wax gourd	cuwgoB350
Csa3G644820	Cucumber (Chinese Long) v2	cucuB133
Csa3G644820	Cucumber (Gy14) v1	cgycuB506
Csa3G644820	Cucurbita maxima (Rimu)	cmacuB243
Csa3G644820	Cucurbita maxima (Rimu)	cmacuB447
Csa3G644820	Cucurbita maxima (Rimu)	cmacuB887
Csa3G644820	Cucurbita moschata (Rifu)	cmocuB230
Csa3G644820	Cucurbita moschata (Rifu)	cmocuB434
Csa3G644820	Cucurbita moschata (Rifu)	cmocuB874
Csa3G644820	Melon (DHL92) v3.5.1	cumeB194
Csa3G644820	Melon (DHL92) v3.5.1	cumeB209
Csa3G644820	Watermelon (Charleston Gray)	cuwcgB179
Csa3G644820	Watermelon (Charleston Gray)	cuwcgB253
Csa3G644820	Watermelon (97103) v1	cuwmB184
Csa3G644820	Watermelon (97103) v1	cuwmB218
Csa3G644820	Cucurbita pepo (Zucchini)	cpecuB138
Csa3G644820	Cucurbita pepo (Zucchini)	cpecuB312
Csa3G644820	Cucurbita pepo (Zucchini)	cpecuB559
Csa3G644820	Cucurbita pepo (Zucchini)	cpecuB601
Csa3G644820	Bottle gourd (USVL1VR-Ls)	culsiB182
Csa3G644820	Bottle gourd (USVL1VR-Ls)	culsiB233
Csa3G644820	Cucumber (Gy14) v2	cgybcuB111
Csa3G644820	Cucumber (Gy14) v2	cgybcuB312