Csa3G642660 (gene) Cucumber (Chinese Long) v2

NameCsa3G642660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 25128792 .. 25129233 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAAATGCATTCACTGGTCCAACAGCGACAATCAATGTTCATTCAAACCAAACACAAATTTCATTAAACCCTGATTGAAATGTCGAATTCCCTTTCTCCTCCTGCGACAGAATCAATAACCATAAATTCAGCATAAACTAAAGGAAGAGAAAAAAAAGGATAGAAATGATGATTTAAATCAATTAACCAAAAGCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTGTTGAATTTTCACGAAGACTTTCGGAAGAGTTTGTTCCTCGGAGCCTCGAAACTGCTGAAAGAATTGGAAAGGCAGAGGATGGTGATAAAAAGGAAGAAGAAGAACTTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATCCGGTATGGAAGATGGGAAAATGGAGGAGCGGAAGTGAGAGACTTGTCGAACCGGGACCGTTAA

mRNA sequence

ATGGGTCGAAATGCATTCACTGGTCCAACAGCGACAATCAATCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTGTTGAATTTTCACGAAGACTTTCGGAAGAGTTTGTTCCTCGGAGCCTCGAAACTGCTGAAAGAATTGGAAAGGCAGAGGATGGTGATAAAAAGGAAGAAGAAGAACTTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATCCGGTATGGAAGATGGGAAAATGGAGGAGCGGAAGTGAGAGACTTGTCGAACCGGGACCGTTAA

Coding sequence (CDS)

ATGGGTCGAAATGCATTCACTGGTCCAACAGCGACAATCAATCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTGTTGAATTTTCACGAAGACTTTCGGAAGAGTTTGTTCCTCGGAGCCTCGAAACTGCTGAAAGAATTGGAAAGGCAGAGGATGGTGATAAAAAGGAAGAAGAAGAACTTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATCCGGTATGGAAGATGGGAAAATGGAGGAGCGGAAGTGAGAGACTTGTCGAACCGGGACCGTTAA

Protein sequence

MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKKNLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR*
BLAST of Csa3G642660 vs. TrEMBL
Match: A0A0A0L8Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642660 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK 60
          MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK
Sbjct: 1  MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK 60

Query: 61 NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR 95
          NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR
Sbjct: 61 NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR 94

BLAST of Csa3G642660 vs. NCBI nr
Match: gi|700203292|gb|KGN58425.1| (hypothetical protein Csa_3G642660 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

Query: 1  MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK 60
          MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK
Sbjct: 1  MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDFRKSLFLGASKLLKELERQRMVIKRKKK 60

Query: 61 NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR 95
          NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR
Sbjct: 61 NLKGANQSDVRRRIRYGRWENGGAEVRDLSNRDR 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L8Z8_CUCSA1.1e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642660 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700203292|gb|KGN58425.1|1.6e-45100.00hypothetical protein Csa_3G642660 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G642660.1Csa3G642660.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 41..65
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None