Csa3G444550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G444550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 20560199 .. 20560369 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCGGATGGATTGTCTCCACCGCCCAACATCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGTGGAGTTGA

mRNA sequence

ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCGGATGGATTGTCTCCACCGCCCAACATCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGTGGAGTTGA

Coding sequence (CDS)

ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCGGATGGATTGTCTCCACCGCCCAACATCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGTGGAGTTGA

Protein sequence

MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS*
Homology
[Close]
BLAST of Csa3G444550 vs. TrEMBL
Match: A0A0A0LBM3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G444550 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 57
          MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS
Sbjct: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 56

[Close]
BLAST of Csa3G444550 vs. TrEMBL
Match: A0A0A0KH57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511020 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-06
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGLS PP+ HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDPP 51

[Close]
BLAST of Csa3G444550 vs. NCBI nr
Match: gi|700202894|gb|KGN58027.1| (hypothetical protein Csa_3G444550 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 57
          MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS
Sbjct: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 56

[Close]
BLAST of Csa3G444550 vs. NCBI nr
Match: gi|449434042|ref|XP_004134805.1| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGLS PP+ HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDPP 51

[Close]
BLAST of Csa3G444550 vs. NCBI nr
Match: gi|659080784|ref|XP_008440979.1| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-06
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGL+ PP+ HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDPP 51

The following BLAST results are available for this feature:
BLAST of Csa3G444550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBM3_CUCSA1.7e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G444550 PE=4 SV=1[more]
A0A0A0KH57_CUCSA3.0e-0659.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511020 PE=4 SV=1[more]
BLAST of Csa3G444550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202894|gb|KGN58027.1|2.4e-25100.00hypothetical protein Csa_3G444550 [Cucumis sativus][more]
gi|449434042|ref|XP_004134805.1|4.3e-0659.62PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativu... [more]
gi|659080784|ref|XP_008440979.1|7.3e-0657.69PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis m... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G444550.1Csa3G444550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G444550CSPI03G23790Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G444550Cucurbita pepo (Zucchini)cpecuB561
Csa3G444550Cucurbita pepo (Zucchini)cpecuB604
Csa3G444550Bottle gourd (USVL1VR-Ls)culsiB163
Csa3G444550Bottle gourd (USVL1VR-Ls)culsiB179
Csa3G444550Bottle gourd (USVL1VR-Ls)culsiB227
Csa3G444550Bottle gourd (USVL1VR-Ls)culsiB236
Csa3G444550Cucumber (Gy14) v2cgybcuB024
Csa3G444550Cucumber (Gy14) v2cgybcuB109
Csa3G444550Melon (DHL92) v3.6.1cumedB211
Csa3G444550Melon (DHL92) v3.6.1cumedB184
Csa3G444550Silver-seed gourdcarcuB0126
Csa3G444550Silver-seed gourdcarcuB0224
Csa3G444550Silver-seed gourdcarcuB1038
Csa3G444550Watermelon (97103) v2cuwmbB201
Csa3G444550Watermelon (97103) v2cuwmbB242
Csa3G444550Watermelon (97103) v2cuwmbB262
Csa3G444550Wax gourdcuwgoB274
Csa3G444550Wax gourdcuwgoB354
Csa3G444550Cucumber (Chinese Long) v2cucuB023
Csa3G444550Cucumber (Gy14) v1cgycuB397
Csa3G444550Cucumber (Gy14) v1cgycuB416
Csa3G444550Cucurbita maxima (Rimu)cmacuB246
Csa3G444550Cucurbita maxima (Rimu)cmacuB360
Csa3G444550Cucurbita maxima (Rimu)cmacuB449
Csa3G444550Cucurbita moschata (Rifu)cmocuB234
Csa3G444550Cucurbita moschata (Rifu)cmocuB350
Csa3G444550Cucurbita moschata (Rifu)cmocuB436
Csa3G444550Melon (DHL92) v3.5.1cumeB199
Csa3G444550Melon (DHL92) v3.5.1cumeB226
Csa3G444550Watermelon (Charleston Gray)cuwcgB187
Csa3G444550Watermelon (Charleston Gray)cuwcgB218
Csa3G444550Watermelon (Charleston Gray)cuwcgB256
Csa3G444550Watermelon (97103) v1cuwmB179
Csa3G444550Watermelon (97103) v1cuwmB215
Csa3G444550Watermelon (97103) v1cuwmB219