Csa3G442050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G442050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 20540249 .. 20543351 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTTGCTTTCTAGTTTAGAAAAGCATGTATGCTCAACCCTTGAGCACGAAGCTCAGCTTTGTGATTGTGTTTATTGTTTGAATAGCTTAAATATGTTGAAAATGCATACTTTGATAGCTTAGAAATGAGTAGAACACATACTGTCAATTTTTTTTAATATTGTGAATTGTGTACGTATTTAATATCATGTGCATAAAACATGTGCTGCTCTTTTTTTTAAAAAAAATATTTGTACCCCTCTTTTGGACTTACCCACTCGATATGATTGTTTGAATGCCAAGCATGATTGTTAGTGAATGTTTGATTGCTTGTATAAAAGAATAAATGCATGAATGGATTTTCTTAGCTAGTCTTCTTTGTTTCTTAACTAGGACGTGCCTATGATGCACTTGTCTATATCTTGCTTAGATAGATCTTGAAAATGATAGGAAAACTTTTTTTTAGAAGTTGAAGATGGTCATAACTTTCTTATCGAGCTTAACCATGAGTTGGGAGTCTCTTGTCTAGCCATAATGAAATTAGAAGTCTTATGTAAAGAATAGGCGTTCAATAAAGCTTGTTGTCACTTTGAAGAGAATGATCAAACTAAAACTAAGTCAAGAACCCTAAACAAGGATAGTCCACCAGTTCTAGCAAGGCCTAGTTACCACACTGCATACCAAATAAAGAAAATAGTGGCTTGCTTGCTATATATAAAGCACTAAAAAAGTGAGATTATCTTTGAGCACAAAAAAATAGACATACAAAAAAAAAAAAAAAAAGGAATAAAAATGCAATATGCATAATAGCTCAAAAAAAAAAAAAGTTGAGTTCGTTAGATCGAGTAAAATATGTTGAGTTCCTTTAGTATGAGAACTTGTGCAGGGAACTCTTCACTTTTGGCCTAACCAAAACCAGACTACCTACTCTTAGCAACCTAGCATCTAGTTGATCAAGGACTTAGAAAAGAGGAGAAATCCTTCCCCATCCACAATAGGGGGAAAACAAGTCTAATGCATTTTTAACTCTTTCTAAACATGTCTAGAGTCAGAGTTGCAAAACATGAGTACATACTAAACATGTTTTAGTCGGGCAATTGTAGTTAAAACTTGTCTCCAACTGACAGCTAGCTTCCTGTGCATGACCAAATGAAACTTAGAATAGCTTTAGATTGATTGTTGAGGCAAAGAGTTAAGCTTACTCAATTGACTTGTTAAGGAGGCATTGAAGTTATACTTTCATGATTGTTTGAGATTCTACACTTAAGTTTGTTGTGTGCTTCTCTTGCATGTTGCTTTAGTGTATGTTTTAGATTTTTCTTTGCTCGAGATGACCAAAGCTTAAGTGGGGGGTTTTAATTTATTTGAGGTATGTTAATGTTGAAGTTTGAATGTAGATCTTGTTTTGTTAGAATGTTTTGTTTTTTTCATGAGGAATTGAGTTTGATTCATCTTTTGAATATGACCATGATAAATTAAATTGATTTCAATTTCCTATTAATTCCCGTATGCCCCAAGCCTCTCTTCTAATCTTGCTCTTTCAATGTGCTTTTATGAGACATTTTTAATTTAGATTTATTCTTTTAGCTTGCGTTTTGTAGGGGGAGTTGTTTTGAAATTTGGAGTTTTTTCTTGTATTTGGAGAATAATTATTATATTTGCAACCATCCTAAATAATAAACATGTTAAACTCAGTTAAAAATCATAAAAGGATTTATTTTTTTATTTTTCTAATTATTTAAAAATAGTATTAGGTTAATATTGATATTTGATCATGTAAAATTAATACTTTAATAGTTGTGGTGCTAAAAAAGAATTACATTGTAAATCCCAGAAACTTAAAATAAATATTCGATAATGTTTGTATTTTAATACAAAAACTGTCCCAATTGATTTGCCATCTAACAAACTAAACAAATATTCCAACAAAAAGGAACGAGATGAGAATGTCGTGCTAACCTACGCAATTCCAGCACCTTATCTCTTGTTGGGATCATCTAATCCGTCTTCTTCCTGCATCTTCCTCAAATCCTCTTAGGTTCTTTCCTCTCCTTTCTACACAAATTGATCACCCATGTTGTTCGCCAGAAAATGATGTAGATTCTTCGTATCTTGCCTGCATTGTCTTTGATTATAATATGATTGAAATTCACTTGTTGATTGGTTTTCAATTGTTAATTACTTTTGGTTTTGCTATTTAGTGATAATACGTTGTGAGATTTTTGTTCGTTTTTGGGTTTTTTGATGTGATTTTGTCCTACAGAATGAAGAGTATGCTACGTATGTCGTAACCTTGCGAGGGGAAATGTTACAGGTGGACCCAAAATGGAGGTAGGATTGATACGTGCAGTTTGAGTTGTGGTTTTGTGAGGATTTGACATTCGTTATATGAATTTTGTAATTAACTATGTCGTTCGATTGATATTTATAACGGTGCGGTTGCTTTTTTTAGGTTGAGAATTTGGACTTAACGCCTCTTTCTATTCATGGTTAATTGATTTTATTTCTTCCTTTTTGTTGATTGAGATTGGTTGTAGAACTCGTTGATGCGTCTACGTTTTAATGTTGGCCTGTTTTTTATTTTTTCTCCCTCTCATTGGGAGCTCTCTTTTGTTTTTCTTTTGTCTTTCTATGTTCTTAATAATCTTTTAACAGTTGAAGTTCTAATCAATGGATAATTATTTCTTTATTGTCTTGATATAGTTGATTTAAATCATCAATCGTGTTGACTGACATTGTCTTGATAATTATTTCTTTTCTTAATTGGTTTTATTTCTTCCTTCTTGTTGACTAAGAATCGTTATAGAACTCGTTGATGCATCTATGTTTTAATTTTGGCCTATTTTTGAATTTTTCTCCCTCTCATTGGAAGCTCTCTTTTGTTTTTCTTTTGTCTTGCTATGTTCTTAATAATCTTTTAACAGTTAAAGTTTCTAATCAATAGATAATTATTTCTTTATTGTCTTGATATAGTTGATTTGAATCATCAATCGTGATGGAAAATTTGAAGCTTGTTTCCTCAGTTTGCTTTTTCTTTGTGCGTATTTATTAGCTCGTTGAGCTTTGGGGACGCAGGAATCACCAGTACATTTATTCGATGAGAGTGGCCATCCATTGA

mRNA sequence

ATGTCTTCTTTGCTTTCTAGTTTAGAAAAGCATCACCTTATCTCTTGTTGGGATCATCTAATCCGTCTTCTTCCTGCATCTTCCTCAAATCCTCTTAGGTTCTTTCCTCTCCTTTCTACACAAATTGATCACCCATGTTGTTCGCCAGAAAATGATAATGAAGAGTATGCTACGTATGTCGTAACCTTGCGAGGGGAAATGTTACAGGTGGACCCAAAATGGAGGAATCACCAGTACATTTATTCGATGAGAGTGGCCATCCATTGA

Coding sequence (CDS)

ATGTCTTCTTTGCTTTCTAGTTTAGAAAAGCATCACCTTATCTCTTGTTGGGATCATCTAATCCGTCTTCTTCCTGCATCTTCCTCAAATCCTCTTAGGTTCTTTCCTCTCCTTTCTACACAAATTGATCACCCATGTTGTTCGCCAGAAAATGATAATGAAGAGTATGCTACGTATGTCGTAACCTTGCGAGGGGAAATGTTACAGGTGGACCCAAAATGGAGGAATCACCAGTACATTTATTCGATGAGAGTGGCCATCCATTGA

Protein sequence

MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYVVTLRGEMLQVDPKWRNHQYIYSMRVAIH*
Homology
[Close]
BLAST of Csa3G442050 vs. TrEMBL
Match: A0A0A0LDA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G442050 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV 60
          MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV
Sbjct: 1  MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV 60

Query: 61 VTLRGEMLQVDPKWRNHQYIYSMRVAIH 89
          VTLRGEMLQVDPKWRNHQYIYSMRVAIH
Sbjct: 61 VTLRGEMLQVDPKWRNHQYIYSMRVAIH 88

[Close]
BLAST of Csa3G442050 vs. NCBI nr
Match: gi|700202893|gb|KGN58026.1| (hypothetical protein Csa_3G442050 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV 60
          MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV
Sbjct: 1  MSSLLSSLEKHHLISCWDHLIRLLPASSSNPLRFFPLLSTQIDHPCCSPENDNEEYATYV 60

Query: 61 VTLRGEMLQVDPKWRNHQYIYSMRVAIH 89
          VTLRGEMLQVDPKWRNHQYIYSMRVAIH
Sbjct: 61 VTLRGEMLQVDPKWRNHQYIYSMRVAIH 88

The following BLAST results are available for this feature:
BLAST of Csa3G442050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDA6_CUCSA3.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G442050 PE=4 SV=1[more]
BLAST of Csa3G442050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202893|gb|KGN58026.1|4.3e-45100.00hypothetical protein Csa_3G442050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102927cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G442050.1Csa3G442050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU102927CU102927transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G442050Cucsa.278510Cucumber (Gy14) v1cgycuB397
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G442050Cucumber (Chinese Long) v2cucuB023
Csa3G442050Cucumber (Gy14) v1cgycuB416
Csa3G442050Cucurbita maxima (Rimu)cmacuB246
Csa3G442050Cucurbita maxima (Rimu)cmacuB360
Csa3G442050Cucurbita maxima (Rimu)cmacuB449
Csa3G442050Cucurbita moschata (Rifu)cmocuB234
Csa3G442050Cucurbita moschata (Rifu)cmocuB350
Csa3G442050Cucurbita moschata (Rifu)cmocuB436
Csa3G442050Melon (DHL92) v3.5.1cumeB199
Csa3G442050Melon (DHL92) v3.5.1cumeB226
Csa3G442050Watermelon (Charleston Gray)cuwcgB187
Csa3G442050Watermelon (Charleston Gray)cuwcgB218
Csa3G442050Watermelon (Charleston Gray)cuwcgB256
Csa3G442050Watermelon (97103) v1cuwmB179
Csa3G442050Watermelon (97103) v1cuwmB215
Csa3G442050Watermelon (97103) v1cuwmB219
Csa3G442050Cucurbita pepo (Zucchini)cpecuB561
Csa3G442050Cucurbita pepo (Zucchini)cpecuB604
Csa3G442050Bottle gourd (USVL1VR-Ls)culsiB163
Csa3G442050Bottle gourd (USVL1VR-Ls)culsiB179
Csa3G442050Bottle gourd (USVL1VR-Ls)culsiB227
Csa3G442050Bottle gourd (USVL1VR-Ls)culsiB236
Csa3G442050Cucumber (Gy14) v2cgybcuB024
Csa3G442050Cucumber (Gy14) v2cgybcuB109
Csa3G442050Melon (DHL92) v3.6.1cumedB211
Csa3G442050Melon (DHL92) v3.6.1cumedB184
Csa3G442050Silver-seed gourdcarcuB0126
Csa3G442050Silver-seed gourdcarcuB0224
Csa3G442050Silver-seed gourdcarcuB1038
Csa3G442050Watermelon (97103) v2cuwmbB201
Csa3G442050Watermelon (97103) v2cuwmbB242
Csa3G442050Watermelon (97103) v2cuwmbB262
Csa3G442050Wax gourdcuwgoB274
Csa3G442050Wax gourdcuwgoB354