Csa3G423820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G423820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 20062960 .. 20063205 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAA

mRNA sequence

ATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAA

Coding sequence (CDS)

ATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAA

Protein sequence

MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQDPSVLSKPETVRPVRSVCLRS*
Homology
[Close]
BLAST of Csa3G423820 vs. TrEMBL
Match: A0A0A0LAP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423820 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
          MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ
Sbjct: 1  MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60

Query: 61 DPSVLSKPETVRPVRSVCLRS 82
          DPSVLSKPETVRPVRSVCLRS
Sbjct: 61 DPSVLSKPETVRPVRSVCLRS 81

[Close]
BLAST of Csa3G423820 vs. NCBI nr
Match: gi|700202861|gb|KGN57994.1| (hypothetical protein Csa_3G423820 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
          MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ
Sbjct: 1  MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60

Query: 61 DPSVLSKPETVRPVRSVCLRS 82
          DPSVLSKPETVRPVRSVCLRS
Sbjct: 61 DPSVLSKPETVRPVRSVCLRS 81

The following BLAST results are available for this feature:
BLAST of Csa3G423820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAP7_CUCSA6.2e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423820 PE=4 SV=1[more]
BLAST of Csa3G423820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202861|gb|KGN57994.1|8.8e-37100.00hypothetical protein Csa_3G423820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G423820.1Csa3G423820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G423820Silver-seed gourdcarcuB0918
Csa3G423820Silver-seed gourdcarcuB1029
Csa3G423820Watermelon (97103) v2cuwmbB210
Csa3G423820Watermelon (97103) v2cuwmbB219
Csa3G423820Wax gourdcuwgoB345
Csa3G423820Wax gourdcuwgoB349
Csa3G423820Cucurbita maxima (Rimu)cmacuB015
Csa3G423820Cucurbita maxima (Rimu)cmacuB457
Csa3G423820Cucurbita moschata (Rifu)cmocuB006
Csa3G423820Cucurbita moschata (Rifu)cmocuB444
Csa3G423820Melon (DHL92) v3.5.1cumeB208
Csa3G423820Watermelon (Charleston Gray)cuwcgB228
Csa3G423820Watermelon (Charleston Gray)cuwcgB234
Csa3G423820Watermelon (97103) v1cuwmB248
Csa3G423820Cucurbita pepo (Zucchini)cpecuB549
Csa3G423820Cucurbita pepo (Zucchini)cpecuB777
Csa3G423820Bottle gourd (USVL1VR-Ls)culsiB194
Csa3G423820Bottle gourd (USVL1VR-Ls)culsiB195
Csa3G423820Cucumber (Gy14) v2cgybcuB109
Csa3G423820Melon (DHL92) v3.6.1cumedB196