Csa3G395420 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G395420
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 19274812 .. 19275198 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACACATAGTAGAATTTAGAACACCCCAACATCCTTCTTTTGGAAAAAACAATTGGGGCGGAGCTTCTCCTTTGCTAGCTAGAAACATCCCCCATGAAACTCTTGAACTAAGGTATCTCAAACTCAATACAACTCGTACTCGTGACGAAATTTTTCCTCTTCAAGAAGACGAAGTCGACGACAATTACTACTTGCCTATCTCATATACGACTCAACTGCAACAGCATTTCAAAAAGACAAAGTATGTGGAAAGGAATTCGTTTTTGTCCAAATTGTCTTTACCATGGAAAGGGAAGAGGGAGACATTGTTAGGCTCAAACTCAAGGAAAAAATGGTTCAAGAAATGGGATTATCAAAACAGGTGGCCTCAAGGGTGGTGCTAA

mRNA sequence

ATGAGACACATAGTAGAATTTAGAACACCCCAACATCCTTCTTTTGGAAAAAACAATTGGGGCGGAGCTTCTCCTTTGCTAGCTAGAAACATCCCCCATGAAACTCTTGAACTAAGGTATCTCAAACTCAATACAACTCGTACTCGTGACGAAATTTTTCCTCTTCAAGAAGACGAAGTCGACGACAATTACTACTTGCCTATCTCATATACGACTCAACTGCAACAGCATTTCAAAAAGACAAAGTATGTGGAAAGGAATTCGTTTTTGTCCAAATTGTCTTTACCATGGAAAGGGAAGAGGGAGACATTGTTAGGCTCAAACTCAAGGAAAAAATGGTTCAAGAAATGGGATTATCAAAACAGGTGGCCTCAAGGGTGGTGCTAA

Coding sequence (CDS)

ATGAGACACATAGTAGAATTTAGAACACCCCAACATCCTTCTTTTGGAAAAAACAATTGGGGCGGAGCTTCTCCTTTGCTAGCTAGAAACATCCCCCATGAAACTCTTGAACTAAGGTATCTCAAACTCAATACAACTCGTACTCGTGACGAAATTTTTCCTCTTCAAGAAGACGAAGTCGACGACAATTACTACTTGCCTATCTCATATACGACTCAACTGCAACAGCATTTCAAAAAGACAAAGTATGTGGAAAGGAATTCGTTTTTGTCCAAATTGTCTTTACCATGGAAAGGGAAGAGGGAGACATTGTTAGGCTCAAACTCAAGGAAAAAATGGTTCAAGAAATGGGATTATCAAAACAGGTGGCCTCAAGGGTGGTGCTAA

Protein sequence

MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVDDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNRWPQGWC*

Homology

[Close]

BLAST of Csa3G395420 vs. TrEMBL
Match: A0A0A0LCZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G395420 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-72
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60
           MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV
Sbjct: 1   MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60

Query: 61  DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120
           DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ
Sbjct: 61  DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120

Query: 121 NRWPQGWC 129
           NRWPQGWC
Sbjct: 121 NRWPQGWC 128

[Close]

BLAST of Csa3G395420 vs. TrEMBL
Match: A0A0D2PWJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G252000 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-30
Identity = 69/128 (53.91%), Postives = 85/128 (66.41%), Query Frame = 1


Query: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61
           R ++EFRTPQHPS G NNWGG SPLLAR+IP E+LE RYL+LN+ R RDEIFP   D  +
Sbjct: 4   RELLEFRTPQHPSLGTNNWGGGSPLLARDIPKESLEQRYLRLNSMRNRDEIFPANADHFN 63

Query: 62  DNYYLPISYTTQLQQHFKKTKYVER-NSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 121
            N        TQ  +H +      R   FLSKL  PWK +  TL  ++SR++WF +WD +
Sbjct: 64  CN------TPTQAGKHGQAPTPSRRGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPK 123

Query: 122 NRWPQGWC 129
           NRWPQGWC
Sbjct: 124 NRWPQGWC 124

[Close]

BLAST of Csa3G395420 vs. TrEMBL
Match: A0A072U2I9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g096660 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-29
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 4   IVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVDDN 63
           ++EFRTPQHPS G NNWGGASPLLARNIP E+LE +Y  LNTTRTRDEIFP +    +D 
Sbjct: 15  MLEFRTPQHPSLGTNNWGGASPLLARNIPEESLEQKYTNLNTTRTRDEIFPAKS---NDL 74

Query: 64  YYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNRW 123
           YYL         + + +     R+  + KL    K KR T LGSNS+K W  + D++NRW
Sbjct: 75  YYL--KQGRSANRSYNRGIARVRDLVIFKLMFSRKEKRTTTLGSNSKKIWLPRLDFKNRW 134

Query: 124 PQGWC 129
           PQGWC
Sbjct: 135 PQGWC 134

[Close]

BLAST of Csa3G395420 vs. TrEMBL
Match: A0A067JUN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17711 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 66/126 (52.38%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 4   IVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVDDN 63
           ++EFRTPQHPS G NNWGGASPLLARN+P E+LE RY +LNT RTRDEIFP Q D  D+ 
Sbjct: 7   LLEFRTPQHPSLGTNNWGGASPLLARNVPKESLEQRYSRLNTVRTRDEIFPSQHD--DNG 66

Query: 64  YYLPISYTTQLQQHFKKTKYVER-NSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 123
            Y         +     T    R    LS+L    K    TL   + +KKWF +WD +NR
Sbjct: 67  TYFNFFPNISSKYEVPNTPCRGRVRGLLSRLIFVRKENTATLGLDSKKKKWFPRWDPKNR 126

Query: 124 WPQGWC 129
           WPQGWC
Sbjct: 127 WPQGWC 130

[Close]

BLAST of Csa3G395420 vs. TrEMBL
Match: B9T2A4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463590 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-27
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 1


Query: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61
           R ++EFRTPQHPS G NNWGGASP+LARN+P E+LE RY +LNT RTRDEIFP+ ED+  
Sbjct: 4   RELLEFRTPQHPSLGTNNWGGASPMLARNVPKESLEQRYSRLNTVRTRDEIFPVAEDD-- 63

Query: 62  DNYYLPISYTTQLQQHFKKTKYVER----NSFLSKLSLPWKGKRETLLGSNSRKK-WFKK 121
                   Y     Q +     V        FLS L  P   K++  LG  ++KK WF +
Sbjct: 64  -------EYFKFFNQFYASKGDVPSMRGGKGFLSWLKYP--RKQKVTLGLKTQKKTWFPR 123

Query: 122 WDYQNRWPQGWC 129
           WD +NRWPQGWC
Sbjct: 124 WDPKNRWPQGWC 124

[Close]

BLAST of Csa3G395420 vs. NCBI nr
Match: gi|700202798|gb|KGN57931.1| (hypothetical protein Csa_3G395420 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 2.7e-72
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60
           MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV
Sbjct: 1   MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60

Query: 61  DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120
           DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ
Sbjct: 61  DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120

Query: 121 NRWPQGWC 129
           NRWPQGWC
Sbjct: 121 NRWPQGWC 128

[Close]

BLAST of Csa3G395420 vs. NCBI nr
Match: gi|763743795|gb|KJB11294.1| (hypothetical protein B456_001G252000 [Gossypium raimondii])

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-30
Identity = 69/128 (53.91%), Postives = 85/128 (66.41%), Query Frame = 1


Query: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61
           R ++EFRTPQHPS G NNWGG SPLLAR+IP E+LE RYL+LN+ R RDEIFP   D  +
Sbjct: 4   RELLEFRTPQHPSLGTNNWGGGSPLLARDIPKESLEQRYLRLNSMRNRDEIFPANADHFN 63

Query: 62  DNYYLPISYTTQLQQHFKKTKYVER-NSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 121
            N        TQ  +H +      R   FLSKL  PWK +  TL  ++SR++WF +WD +
Sbjct: 64  CN------TPTQAGKHGQAPTPSRRGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPK 123

Query: 122 NRWPQGWC 129
           NRWPQGWC
Sbjct: 124 NRWPQGWC 124

[Close]

BLAST of Csa3G395420 vs. NCBI nr
Match: gi|922345923|ref|XP_013449876.1| (hypothetical protein MTR_7g096660 [Medicago truncatula])

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-29
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 4   IVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVDDN 63
           ++EFRTPQHPS G NNWGGASPLLARNIP E+LE +Y  LNTTRTRDEIFP +    +D 
Sbjct: 15  MLEFRTPQHPSLGTNNWGGASPLLARNIPEESLEQKYTNLNTTRTRDEIFPAKS---NDL 74

Query: 64  YYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNRW 123
           YYL         + + +     R+  + KL    K KR T LGSNS+K W  + D++NRW
Sbjct: 75  YYL--KQGRSANRSYNRGIARVRDLVIFKLMFSRKEKRTTTLGSNSKKIWLPRLDFKNRW 134

Query: 124 PQGWC 129
           PQGWC
Sbjct: 135 PQGWC 134

[Close]

BLAST of Csa3G395420 vs. NCBI nr
Match: gi|643713888|gb|KDP26553.1| (hypothetical protein JCGZ_17711 [Jatropha curcas])

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-27
Identity = 66/126 (52.38%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 4   IVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVDDN 63
           ++EFRTPQHPS G NNWGGASPLLARN+P E+LE RY +LNT RTRDEIFP Q D  D+ 
Sbjct: 7   LLEFRTPQHPSLGTNNWGGASPLLARNVPKESLEQRYSRLNTVRTRDEIFPSQHD--DNG 66

Query: 64  YYLPISYTTQLQQHFKKTKYVER-NSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 123
            Y         +     T    R    LS+L    K    TL   + +KKWF +WD +NR
Sbjct: 67  TYFNFFPNISSKYEVPNTPCRGRVRGLLSRLIFVRKENTATLGLDSKKKKWFPRWDPKNR 126

Query: 124 WPQGWC 129
           WPQGWC
Sbjct: 127 WPQGWC 130

[Close]

BLAST of Csa3G395420 vs. NCBI nr
Match: gi|223527929|gb|EEF30016.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 128.6 bits (322), Expect = 7.6e-27
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 1


Query: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61
           R ++EFRTPQHPS G NNWGGASP+LARN+P E+LE RY +LNT RTRDEIFP+ ED+  
Sbjct: 4   RELLEFRTPQHPSLGTNNWGGASPMLARNVPKESLEQRYSRLNTVRTRDEIFPVAEDD-- 63

Query: 62  DNYYLPISYTTQLQQHFKKTKYVER----NSFLSKLSLPWKGKRETLLGSNSRKK-WFKK 121
                   Y     Q +     V        FLS L  P   K++  LG  ++KK WF +
Sbjct: 64  -------EYFKFFNQFYASKGDVPSMRGGKGFLSWLKYP--RKQKVTLGLKTQKKTWFPR 123

Query: 122 WDYQNRWPQGWC 129
           WD +NRWPQGWC
Sbjct: 124 WDPKNRWPQGWC 124

The following BLAST results are available for this feature:

BLAST of Csa3G395420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ1_CUCSA	1.9e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G395420 PE=4 SV=1	[more]
A0A0D2PWJ9_GOSRA	3.9e-30	53.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G252000 PE=4 SV=1	[more]
A0A072U2I9_MEDTR	3.3e-29	54.40	Uncharacterized protein OS=Medicago truncatula GN=MTR_7g096660 PE=4 SV=1	[more]
A0A067JUN9_JATCU	1.8e-27	52.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17711 PE=4 SV=1	[more]
B9T2A4_RICCO	5.3e-27	50.76	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463590 PE=4 SV=1	[more]

BLAST of Csa3G395420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202798\|gb\|KGN57931.1\|	2.7e-72	100.00	hypothetical protein Csa_3G395420 [Cucumis sativus]	[more]
gi\|763743795\|gb\|KJB11294.1\|	5.7e-30	53.91	hypothetical protein B456_001G252000 [Gossypium raimondii]	[more]
gi\|922345923\|ref\|XP_013449876.1\|	4.8e-29	54.40	hypothetical protein MTR_7g096660 [Medicago truncatula]	[more]
gi\|643713888\|gb\|KDP26553.1\|	2.6e-27	52.38	hypothetical protein JCGZ_17711 [Jatropha curcas]	[more]
gi\|223527929\|gb\|EEF30016.1\|	7.6e-27	50.76	conserved hypothetical protein [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005215	transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G395420.1	Csa3G395420.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G395420	Cla005990	Watermelon (97103) v1	cuwmB220
Csa3G395420	ClCG07G000950	Watermelon (Charleston Gray)	cuwcgB257
Csa3G395420	Lsi05G010070	Bottle gourd (USVL1VR-Ls)	culsiB216
Csa3G395420	Cla97C07G129230	Watermelon (97103) v2	cuwmbB243
Csa3G395420	Bhi05G000163	Wax gourd	cuwgoB304
Csa3G395420	CSPI03G22820	Wild cucumber (PI 183967)	cpicuB120
Csa3G395420	CmaCh19G000810	Cucurbita maxima (Rimu)	cmacuB515
Csa3G395420	CmoCh19G000930	Cucurbita moschata (Rifu)	cmocuB506
Csa3G395420	Cp4.1LG15g00750	Cucurbita pepo (Zucchini)	cpecuB244

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G395420	Watermelon (97103) v2	cuwmbB234
Csa3G395420	Cucumber (Gy14) v1	cgycuB037
Csa3G395420	Cucurbita maxima (Rimu)	cmacuB594
Csa3G395420	Cucurbita maxima (Rimu)	cmacuB890
Csa3G395420	Cucurbita moschata (Rifu)	cmocuB582
Csa3G395420	Melon (DHL92) v3.5.1	cumeB213
Csa3G395420	Watermelon (97103) v1	cuwmB282
Csa3G395420	Cucurbita pepo (Zucchini)	cpecuB723
Csa3G395420	Cucumber (Gy14) v2	cgybcuB109
Csa3G395420	Melon (DHL92) v3.6.1	cumedB198
Csa3G395420	Silver-seed gourd	carcuB0769
Csa3G395420	Silver-seed gourd	carcuB0794