Csa3G389860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G389860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Kelch repeat-containing F-box family protein; contains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)
Location	Chr3 : 19055090 .. 19055651 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGAAGTTCACTTTAGATATAAGTCCTCGTGTCTTTATTTTTTATTCCTCTCAAAAAGCCTCATATTATTAGAGATAGTTTCTCTTTATTTTGTACCAATACCATAGATCTTTCACCTTGTCTAACTAATGTAGATCTTTGGTCATACAAGATACCAAAACTGAGAATCCCATATATGATTTGCTGGAAACTTTAAGTCATATAGAGCGATACAATGTTTTCTTCTTCTCATTTGTTCTTCTCTGATCTTAATCTACAATTTTTTCAGATATGAAATGGCATCAAATAGATGGGTTGAAGAATCAAGAGTACCAAGGAAAACTTCTTCCAACTCATCATATGGCTTGGTTGCATTAAATGGAGAATTATATGTTATATCATTTCTAAAGACAGAGTCAGCCGAAGCTCGTAGGCTACGTCATCCTACGAAAGGAGGATCAATGTACATGCAAATCTACAATCCCAAGAAGAAGACGTGGAGATCTCTTGCTACCTGGTCGCCTTTTAATCACTCTCTGGATTTGGATACTGCAGTTATTTGTACAGTTCGTCTGTGA

mRNA sequence

ATGTCATATAGAGCGATACAATGTTTTCTTCTTCTCATTTGTTCTTCTCTGATCTTAATCTACAATTTTTTCAGATATGAAATGGCATCAAATAGATGGGTTGAAGAATCAAGAGTACCAAGGAAAACTTCTTCCAACTCATCATATGGCTTGGTTGCATTAAATGGAGAATTATATGTTATATCATTTCTAAAGACAGAGTCAGCCGAAGCTCGTAGGCTACGTCATCCTACGAAAGGAGGATCAATGTACATGCAAATCTACAATCCCAAGAAGAAGACGTGGAGATCTCTTGCTACCTGGTCGCCTTTTAATCACTCTCTGGATTTGGATACTGCAGTTATTTGTACAGTTCGTCTGTGA

Coding sequence (CDS)

ATGTCATATAGAGCGATACAATGTTTTCTTCTTCTCATTTGTTCTTCTCTGATCTTAATCTACAATTTTTTCAGATATGAAATGGCATCAAATAGATGGGTTGAAGAATCAAGAGTACCAAGGAAAACTTCTTCCAACTCATCATATGGCTTGGTTGCATTAAATGGAGAATTATATGTTATATCATTTCTAAAGACAGAGTCAGCCGAAGCTCGTAGGCTACGTCATCCTACGAAAGGAGGATCAATGTACATGCAAATCTACAATCCCAAGAAGAAGACGTGGAGATCTCTTGCTACCTGGTCGCCTTTTAATCACTCTCTGGATTTGGATACTGCAGTTATTTGTACAGTTCGTCTGTGA

Protein sequence

MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL*

Homology

[Close]

BLAST of Csa3G389860 vs. Swiss-Prot
Match: FK125_ARATH (F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-20
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 25  RYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESA-EARRLRHPTKGGSM 84
           RYEM  NRW +ES VP+K   +   G VALNGEL+V+  L   +  + R  R   K GS+
Sbjct: 346 RYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELHVMILLDGYNLMDTRHTRQQRKAGSL 405

Query: 85  YMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
            + +Y+PKKKTWRS+ +  PFNH LD  T V+CT+RL
Sbjct: 406 MIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTIRL 442

[Close]

BLAST of Csa3G389860 vs. TrEMBL
Match: A0A0A0LCX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389860 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV 60
           MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV
Sbjct: 1   MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV 60

Query: 61  ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 120
           ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL
Sbjct: 61  ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 120

[Close]

BLAST of Csa3G389860 vs. TrEMBL
Match: M5W2T5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006564mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 22  NFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKT-ESAEARRLRHPTKG 81
           + FRY MASNRW +ESR+PRK   NS +G V L+GEL+ I+ LK  E+ E RR R   + 
Sbjct: 306 DIFRYNMASNRWFKESRIPRKAPCNSLFGFVVLDGELHAITLLKAVETTETRRSRLHKRA 365

Query: 82  GSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           G++Y+QIYNPKKKTWRSL T SPF++SLD +TAV+ T+RL
Sbjct: 366 GTLYIQIYNPKKKTWRSLITKSPFHYSLDFNTAVMSTIRL 405

[Close]

BLAST of Csa3G389860 vs. TrEMBL
Match: W9S979_9ROSA (F-box/kelch-repeat protein OS=Morus notabilis GN=L484_009770 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-25
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 22  NFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKT-ESAEARRLR-HPTK 81
           +  RY+MASNRW EESRVPR+   NSS+G V L+GEL+VI+  +  ES + RR R H  K
Sbjct: 321 DILRYDMASNRWREESRVPREAPLNSSFGFVVLDGELHVITLKRAVESVDTRRSRQHSKK 380

Query: 82  GGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
            G +Y+QIYNPK+KTWRSL T SPFN SLD +TAV+C +RL
Sbjct: 381 TGILYIQIYNPKRKTWRSLITKSPFNSSLDFNTAVMCDIRL 421

[Close]

BLAST of Csa3G389860 vs. TrEMBL
Match: A9P8T5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-23
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 24  FRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTES-AEARRLRHPTKGGS 83
           FRY+MASN W  ES VPRK   NSS G   L+GEL+V++FL+ +   + +R R   +GG+
Sbjct: 8   FRYDMASNSWQRESIVPRKAPHNSSCGFAVLDGELHVMTFLRGDDLVKTQRSRQQKRGGT 67

Query: 84  MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           +++QIY+PKKKTWRSL T  PF HSLD  TA++CT+RL
Sbjct: 68  LFVQIYHPKKKTWRSLVTRPPFCHSLDFKTAIMCTIRL 105

[Close]

BLAST of Csa3G389860 vs. TrEMBL
Match: B9GS45_POPTR (Kelch repeat-containing F-box family protein OS=Populus trichocarpa GN=POPTR_0002s04280g PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-23
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 24  FRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTES-AEARRLRHPTKGGS 83
           FRY+MASN W  ES VPRK   NSS G   L+GEL+V++FL+ +   + +R R   +GG+
Sbjct: 317 FRYDMASNSWQRESIVPRKAPHNSSCGFAVLDGELHVMTFLRGDDLVKTQRSRQQKRGGT 376

Query: 84  MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           +++QIY+PKKKTWRSL T  PF HSLD  TA++CT+RL
Sbjct: 377 LFVQIYHPKKKTWRSLVTRPPFCHSLDFKTAIMCTIRL 414

[Close]

BLAST of Csa3G389860 vs. TAIR10
Match: AT4G03030.1 (AT4G03030.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-21
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 25  RYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESA-EARRLRHPTKGGSM 84
           RYEM  NRW +ES VP+K   +   G VALNGEL+V+  L   +  + R  R   K GS+
Sbjct: 346 RYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELHVMILLDGYNLMDTRHTRQQRKAGSL 405

Query: 85  YMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
            + +Y+PKKKTWRS+ +  PFNH LD  T V+CT+RL
Sbjct: 406 MIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTIRL 442

[Close]

BLAST of Csa3G389860 vs. NCBI nr
Match: gi|700202783|gb|KGN57916.1| (hypothetical protein Csa_3G389860 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV 60
           MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV
Sbjct: 1   MSYRAIQCFLLLICSSLILIYNFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYV 60

Query: 61  ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 120
           ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL
Sbjct: 61  ISFLKTESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 120

[Close]

BLAST of Csa3G389860 vs. NCBI nr
Match: gi|449468544|ref|XP_004151981.1| (PREDICTED: F-box/kelch-repeat protein OR23 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 23  FFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPTKGGS 82
           F RYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPTKGGS
Sbjct: 315 FLRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPTKGGS 374

Query: 83  MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL
Sbjct: 375 MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 412

[Close]

BLAST of Csa3G389860 vs. NCBI nr
Match: gi|659123887|ref|XP_008461887.1| (PREDICTED: F-box/kelch-repeat protein OR23 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 23  FFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPTKGGS 82
           FFRYEMASNRWVEESR+PRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHP KGGS
Sbjct: 315 FFRYEMASNRWVEESRLPRKTSSNSSYGLVALNGELYVISFLKTESAEARRLRHPKKGGS 374

Query: 83  MYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           MYMQIYNPKKKTWRSLAT SPFNH LD DTA ICTVR+
Sbjct: 375 MYMQIYNPKKKTWRSLATRSPFNHLLDFDTAAICTVRM 412

[Close]

BLAST of Csa3G389860 vs. NCBI nr
Match: gi|1009147410|ref|XP_015891396.1| (PREDICTED: F-box/kelch-repeat protein OR23 [Ziziphus jujuba])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 1


Query: 22  NFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKT-ESAEARRLRHPTKG 81
           +  RY+MASNRW EES VPRK  S+SS+G V L+GEL+VIS LK  +SAE RRLRH  K 
Sbjct: 331 DILRYDMASNRWCEESHVPRKARSDSSFGFVVLDGELHVISLLKAVKSAETRRLRHHKKP 390

Query: 82  GSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           G++Y+QIYNPK+K+WRSL T  PF   LD +TAVICT+RL
Sbjct: 391 GTLYIQIYNPKRKSWRSLITKPPFQDPLDFNTAVICTIRL 430

[Close]

BLAST of Csa3G389860 vs. NCBI nr
Match: gi|595792285|ref|XP_007199891.1| (hypothetical protein PRUPE_ppa006564mg [Prunus persica])

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-25
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 22  NFFRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVISFLKT-ESAEARRLRHPTKG 81
           + FRY MASNRW +ESR+PRK   NS +G V L+GEL+ I+ LK  E+ E RR R   + 
Sbjct: 306 DIFRYNMASNRWFKESRIPRKAPCNSLFGFVVLDGELHAITLLKAVETTETRRSRLHKRA 365

Query: 82  GSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 121
           G++Y+QIYNPKKKTWRSL T SPF++SLD +TAV+ T+RL
Sbjct: 366 GTLYIQIYNPKKKTWRSLITKSPFHYSLDFNTAVMSTIRL 405

The following BLAST results are available for this feature:

BLAST of Csa3G389860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FK125_ARATH	5.0e-20	49.48	F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1	[more]

BLAST of Csa3G389860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCX2_CUCSA	2.8e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389860 PE=4 SV=1	[more]
M5W2T5_PRUPE	2.7e-25	59.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006564mg PE=4 SV=1	[more]
W9S979_9ROSA	8.0e-25	60.40	F-box/kelch-repeat protein OS=Morus notabilis GN=L484_009770 PE=4 SV=1	[more]
A9P8T5_POPTR	7.5e-23	55.10	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9GS45_POPTR	7.5e-23	55.10	Kelch repeat-containing F-box family protein OS=Populus trichocarpa GN=POPTR_000...	[more]

BLAST of Csa3G389860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03030.1	2.8e-21	49.48	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of Csa3G389860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202783\|gb\|KGN57916.1\|	4.0e-62	100.00	hypothetical protein Csa_3G389860 [Cucumis sativus]	[more]
gi\|449468544\|ref\|XP_004151981.1\|	1.5e-48	98.98	PREDICTED: F-box/kelch-repeat protein OR23 [Cucumis sativus]	[more]
gi\|659123887\|ref\|XP_008461887.1\|	1.0e-44	92.86	PREDICTED: F-box/kelch-repeat protein OR23 [Cucumis melo]	[more]
gi\|1009147410\|ref\|XP_015891396.1\|	1.1e-27	64.00	PREDICTED: F-box/kelch-repeat protein OR23 [Ziziphus jujuba]	[more]
gi\|595792285\|ref\|XP_007199891.1\|	3.9e-25	59.00	hypothetical protein PRUPE_ppa006564mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011043	Gal_Oxase/kelch_b-propeller
IPR015916	Galactose oxidase, beta-propeller

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU132667	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G389860.1	Csa3G389860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU132667	CU132667	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011043	Galactose oxidase/kelch, beta-propeller	unknown	SSF50965	Galactose oxidase, central domain	coord: 21..109 score: 6.9
IPR015916	Galactose oxidase, beta-propeller	GENE3D	G3DSA:2.130.10.80		coord: 24..100 score: 4.
None	No IPR available	PANTHER	PTHR24412	FAMILY NOT NAMED	coord: 24..120 score: 1.6
None	No IPR available	PANTHER	PTHR24412:SF213	F-BOX/KELCH-REPEAT PROTEIN OR23	coord: 24..120 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G389860	Cucsa.053550	Cucumber (Gy14) v1	cgycuB037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G389860	Cucurbita pepo (Zucchini)	cpecuB244
Csa3G389860	Cucurbita pepo (Zucchini)	cpecuB723
Csa3G389860	Bottle gourd (USVL1VR-Ls)	culsiB216
Csa3G389860	Bottle gourd (USVL1VR-Ls)	culsiB222
Csa3G389860	Cucumber (Gy14) v2	cgybcuB109
Csa3G389860	Cucumber (Gy14) v2	cgybcuB117
Csa3G389860	Melon (DHL92) v3.6.1	cumedB198
Csa3G389860	Melon (DHL92) v3.6.1	cumedB235
Csa3G389860	Silver-seed gourd	carcuB0769
Csa3G389860	Silver-seed gourd	carcuB0794
Csa3G389860	Watermelon (97103) v2	cuwmbB211
Csa3G389860	Watermelon (97103) v2	cuwmbB234
Csa3G389860	Watermelon (97103) v2	cuwmbB243
Csa3G389860	Wax gourd	cuwgoB304
Csa3G389860	Cucumber (Chinese Long) v2	cucuB055
Csa3G389860	Cucumber (Chinese Long) v2	cucuB087
Csa3G389860	Cucurbita maxima (Rimu)	cmacuB515
Csa3G389860	Cucurbita maxima (Rimu)	cmacuB594
Csa3G389860	Cucurbita maxima (Rimu)	cmacuB890
Csa3G389860	Cucurbita moschata (Rifu)	cmocuB506
Csa3G389860	Cucurbita moschata (Rifu)	cmocuB582
Csa3G389860	Melon (DHL92) v3.5.1	cumeB213
Csa3G389860	Melon (DHL92) v3.5.1	cumeB240
Csa3G389860	Watermelon (Charleston Gray)	cuwcgB257
Csa3G389860	Watermelon (97103) v1	cuwmB220
Csa3G389860	Watermelon (97103) v1	cuwmB240
Csa3G389860	Watermelon (97103) v1	cuwmB282