Csa3G386300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G386300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 18892634 .. 18893921 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCCTCCCTCACGAAGGAAACCGCCACACCTCCTCCTTCACAAAGAATACCCCCGCTGTCACGCTAGTCGTCAACCACCACGCAGCTGGTCGCCTGTTCGAGCATTCACTCATCGTCGTCACATCGTGCCTAGGATCCTTGTCAATGAGTTTTTGGCCTCTTCTTCTTTAAATTCTCAGTTTGTCTCTCTTTTAAACGTTTCTGCCTTAGTTTATCTTTTTCTTTCAAGTACGGTCTGGTGAGTGCTGAACTACGCTCCTGGCTCATCAAGCGTTGCACTGACTGAATCTTCGTTCTTCAGTTGAAAATTTACCTTTCAACGTGGGTATGCTAAAATTTTGAGGTATGTCGATAATTTACCTTGGTGATCTTGCGAGGTAAAGTCTTTTGAACTTTTCTAAATAGTATTTAATCTATATCTGACATGTATATCTAAACCCAAAATATGGTTTTATCAATTAGCAAGGTTGTGCTTTTGGTTTATTTTATATCAGTGGAGCTCATAAACTGAACAATAGTATGAGCTAGATTAATTATATAATAAAGTTCAAATGCCTAAGTAGGGACAATTATAACACACAAAACATGGATGAATATCATGAGTGTGTTGAGTAAAGTTAAGAATGATTGATTGTAGATACATTAGATAGAAAATCTTACATATCTCTCTTGAATGTGAGTATATTTATTACTTTCATCAAAAATCTTTTCTTTATTTCTTTAGTTTTTCAAAAAATGTTTTTAATAGTTTGGTATAAAACTTACATTTTGTTATTTTCTGTTGAAGTGTGTTGGAATGTAGAATTAATGTTCTTACTGCCTGGTTGTGTATGAATTGTGTTTTGGTTCTATCATTGATGTGTGTGATTGTGGTTCTAAGTAATGTCATGCGAAAAATGGGTAGACTTAATCCCTTTTGTTGCATGTTTAACTCTATTGATGTGGCAAATTGCATGTGTACAAGTTTTCCTCTGAACTCTGTTCGGTCTTCAATCGCTAAATGCAGCCGGCGACTCATCCTGTTCGCGTCCCTCTTCCCGCCGGCGAAGCCGTTGCCGCACACGTCTGCCACAGCCAAGCGGTTCGTCGTTCGTTGATGCTGGAGTGTTGATCGGCTGCGCCTGCCTCCATCCGCAGAGCCCGACCACCGACTGCCACATATTTCCACCATCCGTTCGCATTAGCCCCATTCTGTTTCCGTGGCGCGTGAAGTCGGTCGAAGATCCGACTTCGTCTTCTTCCAATCCTCGCGCCAAAGTTCGTCAAGCCGACGTTTGTTGA

mRNA sequence

ATGTTGCCTCCTCCCTCACGAAGGAAACCGCCACACCTCCTCCTTCACAAAGAATACCCCCGCTGTCACGCTAGTCGTCAACCACCACGCAGCTGGTCGCCTGTTCGAGCATTCACTCATCGTCGTCACATCGTGCCTAGGATCCTTGTCAATGAGTTTTTGGCCTCTTCTTCTTTAAATTCTCAGTTTGTCTCTCTTTTAAACGTTTCTGCCTTAGTTTATCTTTTTCTTTCAACCGGCGACTCATCCTGTTCGCGTCCCTCTTCCCGCCGGCGAAGCCGTTGCCGCACACGTCTGCCACAGCCAAGCGGTTCGTCGTTCGTTGATGCTGGAGTGTTGATCGGCTGCGCCTGCCTCCATCCGCAGAGCCCGACCACCGACTGCCACATATTTCCACCATCCGTTCGCATTAGCCCCATTCTGTTTCCGTGGCGCGTGAAGTCGGTCGAAGATCCGACTTCGTCTTCTTCCAATCCTCGCGCCAAAGTTCGTCAAGCCGACGTTTGTTGA

Coding sequence (CDS)

ATGTTGCCTCCTCCCTCACGAAGGAAACCGCCACACCTCCTCCTTCACAAAGAATACCCCCGCTGTCACGCTAGTCGTCAACCACCACGCAGCTGGTCGCCTGTTCGAGCATTCACTCATCGTCGTCACATCGTGCCTAGGATCCTTGTCAATGAGTTTTTGGCCTCTTCTTCTTTAAATTCTCAGTTTGTCTCTCTTTTAAACGTTTCTGCCTTAGTTTATCTTTTTCTTTCAACCGGCGACTCATCCTGTTCGCGTCCCTCTTCCCGCCGGCGAAGCCGTTGCCGCACACGTCTGCCACAGCCAAGCGGTTCGTCGTTCGTTGATGCTGGAGTGTTGATCGGCTGCGCCTGCCTCCATCCGCAGAGCCCGACCACCGACTGCCACATATTTCCACCATCCGTTCGCATTAGCCCCATTCTGTTTCCGTGGCGCGTGAAGTCGGTCGAAGATCCGACTTCGTCTTCTTCCAATCCTCGCGCCAAAGTTCGTCAAGCCGACGTTTGTTGA

Protein sequence

MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLNSQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLHPQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC*

Homology

[Close]

BLAST of Csa3G386300 vs. TrEMBL
Match: A0A0A0LCV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G386300 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN 60
           MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN
Sbjct: 1   MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN 60

Query: 61  SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH 120
           SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH
Sbjct: 61  SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH 120

Query: 121 PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC 170
           PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC
Sbjct: 121 PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC 169

[Close]

BLAST of Csa3G386300 vs. NCBI nr
Match: gi|700202773|gb|KGN57906.1| (hypothetical protein Csa_3G386300 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 7.3e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN 60
           MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN
Sbjct: 1   MLPPPSRRKPPHLLLHKEYPRCHASRQPPRSWSPVRAFTHRRHIVPRILVNEFLASSSLN 60

Query: 61  SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH 120
           SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH
Sbjct: 61  SQFVSLLNVSALVYLFLSTGDSSCSRPSSRRRSRCRTRLPQPSGSSFVDAGVLIGCACLH 120

Query: 121 PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC 170
           PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC
Sbjct: 121 PQSPTTDCHIFPPSVRISPILFPWRVKSVEDPTSSSSNPRAKVRQADVC 169

The following BLAST results are available for this feature:

BLAST of Csa3G386300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCV9_CUCSA	5.1e-94	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G386300 PE=4 SV=1	[more]

BLAST of Csa3G386300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202773\|gb\|KGN57906.1\|	7.3e-94	100.00	hypothetical protein Csa_3G386300 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G386300.1	Csa3G386300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G386300	CsGy3G021590	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G386300	Cucurbita pepo (Zucchini)	cpecuB244
Csa3G386300	Cucurbita pepo (Zucchini)	cpecuB723
Csa3G386300	Bottle gourd (USVL1VR-Ls)	culsiB216
Csa3G386300	Bottle gourd (USVL1VR-Ls)	culsiB222
Csa3G386300	Cucumber (Gy14) v2	cgybcuB117
Csa3G386300	Melon (DHL92) v3.6.1	cumedB198
Csa3G386300	Melon (DHL92) v3.6.1	cumedB235
Csa3G386300	Silver-seed gourd	carcuB0769
Csa3G386300	Silver-seed gourd	carcuB0794
Csa3G386300	Watermelon (97103) v2	cuwmbB211
Csa3G386300	Watermelon (97103) v2	cuwmbB234
Csa3G386300	Watermelon (97103) v2	cuwmbB243
Csa3G386300	Wax gourd	cuwgoB282
Csa3G386300	Wax gourd	cuwgoB304
Csa3G386300	Cucumber (Chinese Long) v2	cucuB055
Csa3G386300	Cucumber (Chinese Long) v2	cucuB087
Csa3G386300	Cucumber (Gy14) v1	cgycuB037
Csa3G386300	Cucurbita maxima (Rimu)	cmacuB515
Csa3G386300	Cucurbita maxima (Rimu)	cmacuB594
Csa3G386300	Cucurbita maxima (Rimu)	cmacuB890
Csa3G386300	Cucurbita moschata (Rifu)	cmocuB506
Csa3G386300	Cucurbita moschata (Rifu)	cmocuB582
Csa3G386300	Melon (DHL92) v3.5.1	cumeB213
Csa3G386300	Melon (DHL92) v3.5.1	cumeB240
Csa3G386300	Watermelon (Charleston Gray)	cuwcgB257
Csa3G386300	Watermelon (97103) v1	cuwmB220
Csa3G386300	Watermelon (97103) v1	cuwmB240
Csa3G386300	Watermelon (97103) v1	cuwmB282