Csa3G383780 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G383780
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Light-dependent short hypocotyls 1; contains IPR006936 (Domain of unknown function DUF640)
Location	Chr3 : 18830064 .. 18830740 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACTAAGAAACCCTAGCTACCCAAAGAAAAAAAAATCCAAACCTTTTCCTTTCCTTCTACAAATTATAAAGATCTATACCAAAAATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATCATTTTCAACTTCTTT

mRNA sequence

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAGTAATGGAAATTGA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCAACCATTCGGAGTCGTAGTTACAAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCATCTTCCTCGTCATCCAGTCGTTACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCACTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACACCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGCGGGATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAGCAACAACAAATTGCTCAATCAAGTAATGGAAATTGA

Protein sequence

MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQSSNGN*

Homology

[Close]

BLAST of Csa3G383780 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.5e-75
Identity = 133/153 (86.93%), Postives = 138/153 (90.20%), Query Frame = 1


Query: 36  SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 95
           SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 96  HTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYL 155
           HT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 156 REVRDLQSKARGISYEKKKRKRPQQQQIAQSSN 189
           REVRD+QSKARG+SYEKKKRKRP       SS+
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]

BLAST of Csa3G383780 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.0e-73
Identity = 137/183 (74.86%), Postives = 145/183 (79.23%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSS-----SRYENQKRRD 60
           MD I+    + N ++N    +     T       SSSSSSSS  S     SRYENQKRRD
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATTTTT----SSSSSSSSGGSGTNQLSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CP
Sbjct: 61  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 179
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 179

[Close]

BLAST of Csa3G383780 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-72
Identity = 125/145 (86.21%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of Csa3G383780 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-72
Identity = 125/145 (86.21%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of Csa3G383780 vs. Swiss-Prot
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 7.5e-71
Identity = 126/157 (80.25%), Postives = 139/157 (88.54%), Query Frame = 1


Query: 34  GSSSSSSSSS-------SSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRY 93
           GSSSS+SS S       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 94  LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPF 153
           LDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 154 GARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQI 184
            ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ+
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQL 177

[Close]

BLAST of Csa3G383780 vs. TrEMBL
Match: A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-106
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 191
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of Csa3G383780 vs. TrEMBL
Match: A0A072VL17_MEDTR (G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.9e-82
Identity = 152/190 (80.00%), Postives = 162/190 (85.26%), Query Frame = 1


Query: 1   MDSILSEFESLNNNN-----NQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRD 60
           MDSI    +S N++N     N       +NN + N +VGSSS S S+++SSRYENQKRRD
Sbjct: 1   MDSIQDFMDSCNSDNSCSLTNSTITTNSSNNNISNAIVGSSSPSGSTTTSSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP
Sbjct: 61  WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 180
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRDLQSKARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKR 180

Query: 181 KRPQQQQIAQ 186
           KRP QQQ  Q
Sbjct: 181 KRPPQQQPQQ 190

[Close]

BLAST of Csa3G383780 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.0e-80
Identity = 151/183 (82.51%), Postives = 162/183 (88.52%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSI      ++++N++   + V+NN   +L   SSSS SSSS+SSRYENQKRRDWNTF 
Sbjct: 1   MDSI----REMDSSNSENASLNVSNNGTASLA--SSSSPSSSSTSSRYENQKRRDWNTFG 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP  
Sbjct: 121 GSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPA 177

Query: 181 QQI 184
           QQI
Sbjct: 181 QQI 177

[Close]

BLAST of Csa3G383780 vs. TrEMBL
Match: A0A067JRD8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17679 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.0e-79
Identity = 148/183 (80.87%), Postives = 155/183 (84.70%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDS  SE  S NN          T      + +G SS S+S+++ SRYENQKRRDWNTF 
Sbjct: 7   MDSSNSETTSFNNITT----TTATGTAATTITIGQSSPSTSTTTPSRYENQKRRDWNTFG 66

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 67  QYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 126

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP Q
Sbjct: 127 GSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPQ 185

Query: 181 QQI 184
           QQI
Sbjct: 187 QQI 185

[Close]

BLAST of Csa3G383780 vs. TrEMBL
Match: A0A0S3RYD2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G309500 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.3e-79
Identity = 150/185 (81.08%), Postives = 161/185 (87.03%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSS---SSRYENQKRRDWN 60
           MDS + +F    N++N     ++TN T  NL   +SSSS++S+S   SSRYENQKRRDWN
Sbjct: 1   MDSNIQDFIDTCNSDNTCN--LITNTTTTNLTTTASSSSAASNSIASSSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180

Query: 181 PQQQQ 183
           P  QQ
Sbjct: 181 PPPQQ 183

[Close]

BLAST of Csa3G383780 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 281.6 bits (719), Expect = 3.7e-76
Identity = 133/153 (86.93%), Postives = 138/153 (90.20%), Query Frame = 1


Query: 36  SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 95
           SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 96  HTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYL 155
           HT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 156 REVRDLQSKARGISYEKKKRKRPQQQQIAQSSN 189
           REVRD+QSKARG+SYEKKKRKRP       SS+
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]

BLAST of Csa3G383780 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 274.6 bits (701), Expect = 4.5e-74
Identity = 137/183 (74.86%), Postives = 145/183 (79.23%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSS-----SRYENQKRRD 60
           MD I+    + N ++N    +     T       SSSSSSSS  S     SRYENQKRRD
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATTTTT----SSSSSSSSGGSGTNQLSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CP
Sbjct: 61  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 179
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 179

[Close]

BLAST of Csa3G383780 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 254.2 bits (648), Expect = 6.3e-68
Identity = 125/177 (70.62%), Postives = 141/177 (79.66%), Query Frame = 1


Query: 10  SLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPP 69
           S N+NN  P       NT  +L   + SS SS  SSSRYENQKRRDWNTFCQYL+NH PP
Sbjct: 5   SQNHNNRNP-------NT--SLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPP 64

Query: 70  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 129
           L+L+ CSGAHVL+FLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGR
Sbjct: 65  LSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGR 124

Query: 130 LRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQS 187
           LRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYE KKRKR   +QI QS
Sbjct: 125 LRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYE-KKRKRVNNKQITQS 171

[Close]

BLAST of Csa3G383780 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 253.8 bits (647), Expect = 8.2e-68
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 35  SSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTK 94
           +SS+  +  SSSRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 13  NSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTK 72

Query: 95  VHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLY 154
           VH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+
Sbjct: 73  VHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLF 132

Query: 155 LREVRDLQSKARGISYEKKK----RKRPQQQ 182
           LREVRD Q+KARG+SYEKK+    R++PQ Q
Sbjct: 133 LREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]

BLAST of Csa3G383780 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 247.3 bits (630), Expect = 7.7e-66
Identity = 112/145 (77.24%), Postives = 126/145 (86.90%), Query Frame = 1


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G S  SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKT
Sbjct: 18  GPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKT 77

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVH   CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+
Sbjct: 78  KVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 137

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q+KARGI YEKKKRKRP
Sbjct: 138 YLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Csa3G383780 vs. NCBI nr
Match: gi|700202769|gb|KGN57902.1| (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 1.9e-106
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 191
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of Csa3G383780 vs. NCBI nr
Match: gi|659093194|ref|XP_008447416.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 391.3 bits (1004), Expect = 9.4e-106
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNN PFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 191
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of Csa3G383780 vs. NCBI nr
Match: gi|778681005|ref|XP_011651439.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 2.3e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSS 188
           QQIAQSS
Sbjct: 181 QQIAQSS 187

[Close]

BLAST of Csa3G383780 vs. NCBI nr
Match: gi|778681002|ref|XP_004152052.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 6.7e-104
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQS 187
           QQIAQS
Sbjct: 181 QQIAQS 186

[Close]

BLAST of Csa3G383780 vs. NCBI nr
Match: gi|922402679|ref|XP_013468475.1| (G1-like protein [Medicago truncatula])

HSP 1 Score: 312.4 bits (799), Expect = 5.5e-82
Identity = 152/190 (80.00%), Postives = 162/190 (85.26%), Query Frame = 1


Query: 1   MDSILSEFESLNNNN-----NQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRD 60
           MDSI    +S N++N     N       +NN + N +VGSSS S S+++SSRYENQKRRD
Sbjct: 1   MDSIQDFMDSCNSDNSCSLTNSTITTNSSNNNISNAIVGSSSPSGSTTTSSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP
Sbjct: 61  WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 180
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRDLQSKARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKR 180

Query: 181 KRPQQQQIAQ 186
           KRP QQQ  Q
Sbjct: 181 KRPPQQQPQQ 190

The following BLAST results are available for this feature:

BLAST of Csa3G383780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH3_ARATH	6.5e-75	86.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ...	[more]
LSH4_ARATH	8.0e-73	74.86	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L6_ORYSI	1.4e-72	86.21	Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1	[more]
G1L6_ORYSJ	1.4e-72	86.21	Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1	[more]
G1L4_ORYSJ	7.5e-71	80.25	Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2	[more]

BLAST of Csa3G383780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB62_CUCSA	1.3e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1	[more]
A0A072VL17_MEDTR	3.9e-82	80.00	G1-like protein OS=Medicago truncatula GN=MTR_1g069825 PE=4 SV=1	[more]
A0A061DNN8_THECC	8.0e-80	82.51	IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P...	[more]
A0A067JRD8_JATCU	1.0e-79	80.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17679 PE=4 SV=1	[more]
A0A0S3RYD2_PHAAN	2.3e-79	81.08	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G309500 PE=...	[more]

BLAST of Csa3G383780 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31160.1	3.7e-76	86.93	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.5e-74	74.86	Protein of unknown function (DUF640)	[more]
AT3G04510.1	6.3e-68	70.62	Protein of unknown function (DUF640)	[more]
AT5G28490.1	8.2e-68	78.81	Protein of unknown function (DUF640)	[more]
AT1G07090.1	7.7e-66	77.24	Protein of unknown function (DUF640)	[more]

BLAST of Csa3G383780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202769\|gb\|KGN57902.1\|	1.9e-106	100.00	hypothetical protein Csa_3G383780 [Cucumis sativus]	[more]
gi\|659093194\|ref\|XP_008447416.1\|	9.4e-106	99.47	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
gi\|778681005\|ref\|XP_011651439.1\|	2.3e-104	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu...	[more]
gi\|778681002\|ref\|XP_004152052.2\|	6.7e-104	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu...	[more]
gi\|922402679\|ref\|XP_013468475.1\|	5.5e-82	80.00	G1-like protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0010014	meristem initiation
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0048441	petal development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0048834	specification of petal number
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU124412	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G383780.1	Csa3G383780.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU124412	CU124412	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 40..160 score: 7.6
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 47..174 score: 84
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 1..187 score: 1.6E
None	No IPR available	PANTHER	PTHR31165:SF13	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 1..187 score: 1.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G383780	CmaCh19G000930	Cucurbita maxima (Rimu)	cmacuB515

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G383780	Melon (DHL92) v3.5.1	cumeB213
Csa3G383780	Melon (DHL92) v3.5.1	cumeB240
Csa3G383780	Watermelon (Charleston Gray)	cuwcgB257
Csa3G383780	Watermelon (97103) v1	cuwmB220
Csa3G383780	Watermelon (97103) v1	cuwmB240
Csa3G383780	Cucurbita pepo (Zucchini)	cpecuB244
Csa3G383780	Cucurbita pepo (Zucchini)	cpecuB723
Csa3G383780	Bottle gourd (USVL1VR-Ls)	culsiB216
Csa3G383780	Bottle gourd (USVL1VR-Ls)	culsiB222
Csa3G383780	Cucumber (Gy14) v2	cgybcuB109
Csa3G383780	Cucumber (Gy14) v2	cgybcuB117
Csa3G383780	Melon (DHL92) v3.6.1	cumedB198
Csa3G383780	Melon (DHL92) v3.6.1	cumedB235
Csa3G383780	Silver-seed gourd	carcuB0769
Csa3G383780	Silver-seed gourd	carcuB0794
Csa3G383780	Watermelon (97103) v2	cuwmbB211
Csa3G383780	Watermelon (97103) v2	cuwmbB234
Csa3G383780	Watermelon (97103) v2	cuwmbB243
Csa3G383780	Wax gourd	cuwgoB282
Csa3G383780	Wax gourd	cuwgoB304
Csa3G383780	Cucumber (Chinese Long) v2	cucuB055
Csa3G383780	Cucumber (Chinese Long) v2	cucuB087
Csa3G383780	Cucumber (Gy14) v1	cgycuB037
Csa3G383780	Cucurbita maxima (Rimu)	cmacuB594
Csa3G383780	Cucurbita maxima (Rimu)	cmacuB890
Csa3G383780	Cucurbita moschata (Rifu)	cmocuB506
Csa3G383780	Cucurbita moschata (Rifu)	cmocuB582