Csa3G357090 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G357090
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 18328462 .. 18329239 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGTATTCTAATATGGAATGTGTTGGATATTGGGATCGATTTTAATTTCTTTAAAAAAGTTATAAACTAATTCTTTTTATACGATGTATAGAAATCATTCTTTTGGTTTATTGTGTTCAATGAAATTCCTCTTTTGATTTCCCCAATTAGTAAAATACGAACAAGCAAACCTCTGGAAAACTAATATCTTGTTAATGATATATAGTCTCTCTTTGTTAATACATAATTGCCTAAAATTTCTGCTTAAAACTACAATTGAAATAATTGATTTTTTCCAAGCTTGGTCACTAGGAAAGGACCAATATCAAGTAATTATTTGGGTAGTGAAAATCATCTAATCCCAAATATTCTGTCCCTGTTGGACATTTGATCAACTGACATGATGATTGAATTTGGTTATGCTTTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGGTATCGGTTCCTAGAACTGACTTGGTAGTTGTTCTTCTAACTTGTAACTTTGATTTTTCTTTAGTCAACAAAATAATTATTAATGAATATCATAATTGTCAATTCATTTGTCTTAAACTGCTAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

mRNA sequence

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

Coding sequence (CDS)

ATGTCGAGAAGAAGATTCCACGGTGGCAACGTCGAAGTTGTGACAGGCTTGTTACAAACTTTGATGAAATTACATTCCACTTTATTGAATGCATACACATGCTGCTTGCGGAATTCCAAGTTACAGAATCCCAAAGGCGATGGATCAACACAACTCCAAACTCCAGATTCACTTATGAAGACTCCATTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAACAATAGTAAGTGTTAATTAA

Protein sequence

MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVSVN*

Homology

[Close]

BLAST of Csa3G357090 vs. TrEMBL
Match: A0A0A0L7B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G357090 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60
          MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK
Sbjct: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60

Query: 61 TPLQNGSSGYHTTSSTIVSVN 82
          TPLQNGSSGYHTTSSTIVSVN
Sbjct: 61 TPLQNGSSGYHTTSSTIVSVN 81

[Close]

BLAST of Csa3G357090 vs. TrEMBL
Match: A0A0A0LEG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881710 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KG+GSTQLQT DS++KTP+QNGS+GYHTTSS I S
Sbjct: 155 LRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPS 198

[Close]

BLAST of Csa3G357090 vs. NCBI nr
Match: gi|700202737|gb|KGN57870.1| (hypothetical protein Csa_3G357090 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60
          MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK
Sbjct: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60

Query: 61 TPLQNGSSGYHTTSSTIVSVN 82
          TPLQNGSSGYHTTSSTIVSVN
Sbjct: 61 TPLQNGSSGYHTTSSTIVSVN 81

[Close]

BLAST of Csa3G357090 vs. NCBI nr
Match: gi|778688613|ref|XP_011652794.1| (PREDICTED: uncharacterized protein LOC105435099 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60
          MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK
Sbjct: 1  MSRRRFHGGNVEVVTGLLQTLMKLHSTLLNAYTCCLRNSKLQNPKGDGSTQLQTPDSLMK 60

Query: 61 TPLQNGSSGYHTTSSTIV 79
          TPLQNGSSGYHTTSSTI+
Sbjct: 61 TPLQNGSSGYHTTSSTIL 78

[Close]

BLAST of Csa3G357090 vs. NCBI nr
Match: gi|659132676|ref|XP_008466326.1| (PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KGDGSTQLQT DS++KTP+QNGSSGYHTTSS I S
Sbjct: 155 LRNSKLQNLKGDGSTQLQTSDSIVKTPVQNGSSGYHTTSSAIPS 198

[Close]

BLAST of Csa3G357090 vs. NCBI nr
Match: gi|449437074|ref|XP_004136317.1| (PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 36  LRNSKLQNPKGDGSTQLQTPDSLMKTPLQNGSSGYHTTSSTIVS 80
           LRNSKLQN KG+GSTQLQT DS++KTP+QNGS+GYHTTSS I S
Sbjct: 155 LRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPS 198

The following BLAST results are available for this feature:

BLAST of Csa3G357090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7B3_CUCSA	1.5e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G357090 PE=4 SV=1	[more]
A0A0A0LEG7_CUCSA	1.3e-10	79.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881710 PE=4 SV=1	[more]

BLAST of Csa3G357090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202737\|gb\|KGN57870.1\|	2.1e-38	100.00	hypothetical protein Csa_3G357090 [Cucumis sativus]	[more]
gi\|778688613\|ref\|XP_011652794.1\|	2.0e-36	98.72	PREDICTED: uncharacterized protein LOC105435099 [Cucumis sativus]	[more]
gi\|659132676\|ref\|XP_008466326.1\|	2.2e-11	84.09	PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]	[more]
gi\|449437074\|ref\|XP_004136317.1\|	1.9e-10	79.55	PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU161495	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G357090.1	Csa3G357090.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU161495	CU161495	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G357090	CSPI03G22110	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G357090	Wax gourd	cuwgoB289
Csa3G357090	Cucumber (Gy14) v1	cgycuB290
Csa3G357090	Cucumber (Gy14) v1	cgycuB291
Csa3G357090	Cucurbita maxima (Rimu)	cmacuB322
Csa3G357090	Cucurbita maxima (Rimu)	cmacuB410
Csa3G357090	Cucurbita moschata (Rifu)	cmocuB311
Csa3G357090	Cucurbita moschata (Rifu)	cmocuB400
Csa3G357090	Melon (DHL92) v3.5.1	cumeB250
Csa3G357090	Watermelon (Charleston Gray)	cuwcgB235
Csa3G357090	Watermelon (97103) v1	cuwmB220
Csa3G357090	Watermelon (97103) v1	cuwmB249
Csa3G357090	Cucurbita pepo (Zucchini)	cpecuB035
Csa3G357090	Cucurbita pepo (Zucchini)	cpecuB207
Csa3G357090	Bottle gourd (USVL1VR-Ls)	culsiB218
Csa3G357090	Cucumber (Gy14) v2	cgybcuB109
Csa3G357090	Cucumber (Gy14) v2	cgybcuB118
Csa3G357090	Melon (DHL92) v3.6.1	cumedB242
Csa3G357090	Silver-seed gourd	carcuB0566
Csa3G357090	Silver-seed gourd	carcuB1002
Csa3G357090	Watermelon (97103) v2	cuwmbB220